Detail information of GWHGAAEX010455/evm.TU.scaffold_3.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186681693|ref|YP_001864889.1|6.00E-19hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
KOGKOG03221.00E-60G-protein beta subunit-like protein GNB1L, contains WD repeats
nrgi|743845199|ref|XP_010938523.1|8.55E-174PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Elaeis guineensis]
Swissprottr|Q93YQ1|RTOR1_ARATH2.00E-08Regulatory-associated protein of TOR 1
trEMBLtr|M0U344|M0U344_MUSAM5.00E-167Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P24370_001}
TAIRAT4G298601.00E-60Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000234938263549396+
Transcript Sequence

Network for GWHGAAEX010455

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4010467.70E-07
PF00400.31WD403193560.004
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.580
SRR2545915Juvenile tuber13.520
SRP108465SRR5643513five period of Gastrodia elata12.000
SRR5643514five period of Gastrodia elata11.520
SRR5643515five period of Gastrodia elata9.900
SRR5643524five period of Gastrodia elata10.710
SRR5643525five period of Gastrodia elata5.620
SRR5643528five period of Gastrodia elata6.430
SRR5643658five period of Gastrodia elata8.520
SRR5643659five period of Gastrodia elata9.920
SRR5643660five period of Gastrodia elata10.750
SRR5643661five period of Gastrodia elata9.840
SRR5643662five period of Gastrodia elata10.990
SRR5643663five period of Gastrodia elata10.810
SRR5643664five period of Gastrodia elata10.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.810
SRR6049655Rhizomagastrodiae_C368-T10_good_18.090
SRR6049656Rhizomagastrodiae_C368-T07_good_111.070
SRR6049657Rhizomagastrodiae_C368-T07_good_111.180
SRR6049658Rhizomagastrodiae_C368-T04_good_111.560
SRR6049659Rhizomagastrodiae_C368-T04_good_113.880
SRR6049660Rhizomagastrodiae_C368-T01_good_19.910
SRR6049661Rhizomagastrodiae_C368-T04_good_110.850
SRR6049662Rhizomagastrodiae_C368-T01_good_110.130
SRR6049663Rhizomagastrodiae_C368-T01_good_110.420
SRR6049664Rhizomagastrodiae_C368-T10_good_111.970
SRR6049665Rhizomagastrodiae_C368-T10_good_111.970
SRP279888GastroGastrodia elata tuber 17.41
JuvenJuvenile tuber16.99
Mother_GastroMother tuber of Gastrodia elata 10.31
Mother_JuvenMother tuber of Juvenile 14.87