Detail information of GWHGAAEX010457/evm.TU.scaffold_3.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695010532|ref|XP_009391939.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g36980, mitochondrial [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SJK9|PP189_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g36980, mitochondrial (Precursor) |
| trEMBL | tr|M0SDZ5|M0SDZ5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P12280_001} |
| TAIR | AT2G36980 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 3882109 | 3884646 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010457
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 39 | 67 | 0.0042 |
| PF01535.19 | PPR | 111 | 132 | 0.29 |
| PF13041.5 | PPR_2 | 167 | 215 | 3.70E-08 |
| PF01535.19 | PPR | 241 | 267 | 0.019 |
| PF01535.19 | PPR | 271 | 293 | 0.00024 |
| PF01535.19 | PPR | 302 | 330 | 0.0003 |
| PF13041.5 | PPR_2 | 400 | 449 | 1.70E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.710 |
| SRR2545915 | Juvenile tuber | 0.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.450 |
| SRR5643514 | five period of Gastrodia elata | 0.830 | |
| SRR5643515 | five period of Gastrodia elata | 0.620 | |
| SRR5643524 | five period of Gastrodia elata | 0.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.170 | |
| SRR5643528 | five period of Gastrodia elata | 0.270 | |
| SRR5643658 | five period of Gastrodia elata | 0.070 | |
| SRR5643659 | five period of Gastrodia elata | 1.020 | |
| SRR5643660 | five period of Gastrodia elata | 0.940 | |
| SRR5643661 | five period of Gastrodia elata | 0.880 | |
| SRR5643662 | five period of Gastrodia elata | 0.910 | |
| SRR5643663 | five period of Gastrodia elata | 0.600 | |
| SRR5643664 | five period of Gastrodia elata | 0.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.02 |
| Juven | Juvenile tuber | 0.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.09 | |
| Mother_Juven | Mother tuber of Juvenile | 0.04 |