Detail information of GWHGAAEX010458/evm.TU.scaffold_3.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 8.00E-60 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695074618|ref|XP_009384519.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|C0LGS2|Y4361_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (Precursor) |
| trEMBL | tr|C5YEF7|C5YEF7_SORBI | 0 | Putative uncharacterized protein Sb06g026090 {ECO:0000313|EMBL:EES11300.1} |
| TAIR | AT4G36180 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 4224826 | 4228572 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010458
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 36 | 74 | 1.40E-08 |
| PF13855.5 | LRR_8 | 106 | 165 | 2.50E-09 |
| PF00560.32 | LRR_1 | 176 | 196 | 0.54 |
| PF13855.5 | LRR_8 | 229 | 284 | 2.50E-06 |
| PF13516.5 | LRR_6 | 356 | 371 | 0.97 |
| PF13855.5 | LRR_8 | 405 | 464 | 3.60E-07 |
| PF13855.5 | LRR_8 | 476 | 533 | 2.00E-08 |
| PF13855.5 | LRR_8 | 574 | 633 | 1.40E-09 |
| PF00069.24 | Pkinase | 808 | 1031 | 9.90E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VII-3 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.200 |
| SRR2545915 | Juvenile tuber | 1.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.880 |
| SRR5643514 | five period of Gastrodia elata | 2.850 | |
| SRR5643515 | five period of Gastrodia elata | 1.600 | |
| SRR5643524 | five period of Gastrodia elata | 2.140 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.100 | |
| SRR5643658 | five period of Gastrodia elata | 0.030 | |
| SRR5643659 | five period of Gastrodia elata | 0.320 | |
| SRR5643660 | five period of Gastrodia elata | 0.040 | |
| SRR5643661 | five period of Gastrodia elata | 0.300 | |
| SRR5643662 | five period of Gastrodia elata | 0.620 | |
| SRR5643663 | five period of Gastrodia elata | 0.160 | |
| SRR5643664 | five period of Gastrodia elata | 1.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.05 |
| Juven | Juvenile tuber | 0.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.05 | |
| Mother_Juven | Mother tuber of Juvenile | 0.07 |