Detail information of GWHGAAEX010461/evm.TU.scaffold_3.68


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743854565|ref|XP_010940946.1|7.19E-179PREDICTED: uncharacterized protein LOC105059370 isoform X1 [Elaeis guineensis]
trEMBLtr|V4T9T9|V4T9T9_9ROSI2.00E-165Uncharacterized protein {ECO:0000313|EMBL:ESR50022.1}
TAIRAT4G177602.00E-114damaged DNA binding;exodeoxyribonuclease IIIs

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000247656334773262+
Transcript Sequence

Network for GWHGAAEX010461

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02144.15Rad1142561.70E-23
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02830HRAD1, RAD17 Cell cycle - yeast map04111
Meiosis - yeastmap04113
Cellular senescencemap04218

Gene Ontology

GO term OntologyName
GO:0000077Biological ProcessDNA damage checkpoint
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.960
SRR2545915Juvenile tuber5.130
SRP108465SRR5643513five period of Gastrodia elata3.500
SRR5643514five period of Gastrodia elata4.580
SRR5643515five period of Gastrodia elata2.800
SRR5643524five period of Gastrodia elata4.040
SRR5643525five period of Gastrodia elata3.890
SRR5643528five period of Gastrodia elata3.220
SRR5643658five period of Gastrodia elata3.280
SRR5643659five period of Gastrodia elata5.470
SRR5643660five period of Gastrodia elata6.350
SRR5643661five period of Gastrodia elata6.920
SRR5643662five period of Gastrodia elata3.900
SRR5643663five period of Gastrodia elata4.520
SRR5643664five period of Gastrodia elata5.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.260
SRR6049655Rhizomagastrodiae_C368-T10_good_13.500
SRR6049656Rhizomagastrodiae_C368-T07_good_12.790
SRR6049657Rhizomagastrodiae_C368-T07_good_13.900
SRR6049658Rhizomagastrodiae_C368-T04_good_14.010
SRR6049659Rhizomagastrodiae_C368-T04_good_14.610
SRR6049660Rhizomagastrodiae_C368-T01_good_15.060
SRR6049661Rhizomagastrodiae_C368-T04_good_14.640
SRR6049662Rhizomagastrodiae_C368-T01_good_14.240
SRR6049663Rhizomagastrodiae_C368-T01_good_13.880
SRR6049664Rhizomagastrodiae_C368-T10_good_13.230
SRR6049665Rhizomagastrodiae_C368-T10_good_13.230
SRP279888GastroGastrodia elata tuber 6.83
JuvenJuvenile tuber5.75
Mother_GastroMother tuber of Gastrodia elata 3.47
Mother_JuvenMother tuber of Juvenile 3.94