Gene detail

Detail information of GWHGAAEX010463/evm.TU.scaffold_3.71

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|51893978\|ref\|YP_076669.1\|	4.00E-11	glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
KOG	KOG0117	1.00E-147	Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
nr	gi\|672199191\|ref\|XP_008777550.1\|	0	PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|P42731\|PABP2_ARATH	6.00E-16	Polyadenylate-binding protein 2
trEMBL	tr\|D7U819\|D7U819_VITVI	5.00E-179	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38701.3}
TAIR	AT4G00830	1.00E-147	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	5032776	5053690	+

Transcript Sequence
>GWHTAAEX010463 TGAACTGTGTTATTGAAAGATGTCTGTGTTATTAAAAATTGTTTGTGCTTTTTTAAGCGGTTTTGTAGTTCGAGACCTAGAATAGAGCAACTAATGGGGATAAAAGGGCCAGTAATTTGCTGTAGGGAGGCTGTGTCATATGAGTTAATTGGAGAATATTAGAAAAAAAAATTAGGTTAATCAATTTTAATACCACAGTGGAGGAGCCAAAATTGTTAGAGGTCAGTGGATTGTGTAAACCTGCTCTTGCTTGCTGCATGCTAGCTCTCCACTTTGATTGCCACCCCGACAAGTAAAATAGTTTTTGGATCTATTTCTGAATGAAGTAAGGATGGAGTGAAAAATATGTAATGTAAAACCTTTAAATCATGATGGTTCATTGACAATGAGTTTACTAAAATGTCAGGAATTAGTTTTACTTGTAGCTAAAGTGATTGTCATTAGAACATAGTGCTATTTAGCATATATAGGTGTTGCTCTTTGTTATCCAGTTTTTTCAATTGTTTTTTTTTGGATATTTCGAACCCTTAAAATTTTGTGATTCAGCCCATACCCTCAATGCTTTTTAGATTTTTGCAAGAGGATTCCATGGCTGATCAGCATACTTCAGCTGAGTCAGATGAACAAATTGACCTTGATGGAGACAATGACATTGAAGATATGATGGATGATGAAGACGCTAGAGAGGAAGATGGATTCCGGAGAGTAGGAATCGAGTATCATGAAGAAGAGCAGCTTGATGAGTACAGCGAAGAAGATAATGAATCTGATGGCGAAGAGCATGGTGGTGCTTCATTATCAGATGAGTTAAATCATGCTTCTAGCCCTTTGAAAGGTGAAGGACCTCCTGTAGGAACAATTAACGAGGAAGAAAGTGAAAAATATGCTGAATTGCTTGCTCTTCCTCCACATGGATCAGAAGTTTTTGTTGGTGGCCTTCCTCGTGATGCAACTGACGAGGATCTGAGAGACCTATGTGAACCATTTGGTGAAATTCTGGAGATACGCCTGGTAAAGGACAAAGATAAAAAGGAAAATAAGGGTTTTGCATTCATAGTATTCACAACTAGGAATGCTGCAGAGAAGGCCATAGAGGAGATTCAAGACAAAGAACTTAAGGGGAGAAAATTGAGATGTTCCTTATCGCAAGTTAAACACAGATTGTTTATTGGAAATATTCCAAAGTGCTTGGCTGAAGAAGATTTGAGGAAAATTCTTGAGCAGACTGGTCCTGGAATTGAAAATATTGAATGCTTTAAGGACCCGCAAAATCCAAACCGTAATCGTGGTTTTCTCTTTGTTGAGTACTATAACAATGCATGTGCTGACTATGCAAGACAAAAAATGTCAAGGTCAAACTTTAAGATTGATGGAAGCACTCCTACAGTAAGATGGGCTGACCCTAAAAATGCAACGGATGCTTCTGCTGCTACTCAGGTGAAAGCCATCTTTGTGAAAAACTTGCCAGAAAATATTGATTCAGAAAAGTTGAAGAAACTTTTTGAACGACATGGGGATATTGCCAAAGTTGTTTTGCCACCGGCTAAAGCTGGGCAAAAACGAGACTACGGATTTATTCATTTTGTTGAGAGATCCAGTGCTCTGAATGCAGTAAAAGGAACTGAAAAATATGAAATTGATGGACAAGCAGTAGAGGTCTCTCTTGCAAAGCCTCAAACGTCTAAGTTAGAGAGCAAGCATAAATACAGGCAACTCCCAAATTTTTCTTCTCACGGCTATCCTGGGGATACGCATGCGTCTTTTGGCGGTGGTTATAGCTCAACTGGATTGGGACAGCCAATGATATATGGCAAAGGCTTGTCCCCTGCTGGGATGAGAATGGTGCCATTGGTTCTGCCGGACGGCCGTGTTGGTTATGTGCTTCAACAGCCTGGCACACAGCCTCTGCCACATCCGCCACCTCATCGAAGAAGTGATCGTGACGGCAGATCGCCAATTCATCGAAGAAGTGATCGTGGTGGTGGATCTCCACTACATCGAAGAACTGATCGTGGCAATGGATTGAGCTATAGTGCGGATAGTGGGAGGGATGGAAGTCGAGGACGAAGATATCGCCCTTATTAGAATACAAGTCCAAGCTGCTTCGACATGATAACTACTATTGTTAGTTTCATCAAAAACTTATGTCATGTATCATAACTTCATCATACTAAAGATGTATCATAACTTCATCAAACTTATGTCATGTATCATATCATATACTCCTTATTTTTTCAATATTTTGTTGGAGTTGATACATAGCATCAAAAACTTACCTTTTTATGGAATGACAGCCCGCCGATAAAGTGAAAGTAACAACACATTTAAGAGAGACTGGTCCTGGAATTGATGTGTATTTTACAAAAGAGAGTTGGAAGTGTTTTGTTTTT

Network for GWHGAAEX010463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	122	192	3.40E-22
PF00076.21	RRM_1	202	268	1.10E-09
PF00076.21	RRM_1	297	365	5.70E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	120.150
SRP064423	SRR2545915	Juvenile tuber	136.050
SRP108465	SRR5643513	five period of Gastrodia elata	57.500
	SRR5643514	five period of Gastrodia elata	50.120
	SRR5643515	five period of Gastrodia elata	48.830
	SRR5643524	five period of Gastrodia elata	50.670
	SRR5643525	five period of Gastrodia elata	33.490
	SRR5643528	five period of Gastrodia elata	35.130
	SRR5643658	five period of Gastrodia elata	45.190
	SRR5643659	five period of Gastrodia elata	67.890
	SRR5643660	five period of Gastrodia elata	68.610
	SRR5643661	five period of Gastrodia elata	57.630
	SRR5643662	five period of Gastrodia elata	54.910
	SRR5643663	five period of Gastrodia elata	63.070
	SRR5643664	five period of Gastrodia elata	62.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	90.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	70.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	111.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	103.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	124.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	94.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	101.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	80.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	61.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	61.650
SRP279888	Gastro	Gastrodia elata tuber	74.68
	Juven	Juvenile tuber	81.98
	Mother_Gastro	Mother tuber of Gastrodia elata	39.25
	Mother_Juven	Mother tuber of Juvenile	49.34