Detail information of GWHGAAEX010468/evm.TU.scaffold_3.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325959168|ref|YP_004290634.1|1.00E-178glutamate decarboxylase [Methanobacterium sp. AL-21]
KOGKOG13830Glutamate decarboxylase/sphingosine phosphate lyase
nrgi|700212732|gb|AIU48022.1|0glutamate decarboxylase [Dendrobium catenatum]
Swissprottr|Q9ZPS3|DCE4_ARATH0Glutamate decarboxylase 4
trEMBLtr|A0A097PJ30|A0A097PJ30_9ASPA0Glutamate decarboxylase {ECO:0000313|EMBL:AIU48022.1}
TAIRAT2G020100glutamate decarboxylase 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000263739576379612-
Transcript Sequence

Network for GWHGAAEX010468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00282.18Pyridoxal_deC343825.80E-105
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01580E4.1.1.15, gadB, gadA, GAD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Butanoate metabolismmap00650
Pyrimidine metabolismmap00240
beta-Alanine metabolismmap00410
Taurine and hypotaurine metabolismmap00430
Quorum sensingmap02024
GABAergic synapsemap04727

Gene Ontology

GO term OntologyName
GO:0006536Biological Processglutamate metabolic process
GO:0019752Biological Processcarboxylic acid metabolic process
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0016831Molecular Functioncarboxy-lyase activity
GO:0003824Molecular Functioncatalytic activity
GO:0004351Molecular Functionglutamate decarboxylase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.620
SRR2545915Juvenile tuber0.100
SRP108465SRR5643513five period of Gastrodia elata11.380
SRR5643514five period of Gastrodia elata3.400
SRR5643515five period of Gastrodia elata2.860
SRR5643524five period of Gastrodia elata2.700
SRR5643525five period of Gastrodia elata2.350
SRR5643528five period of Gastrodia elata2.230
SRR5643658five period of Gastrodia elata1.890
SRR5643659five period of Gastrodia elata0.480
SRR5643660five period of Gastrodia elata0.640
SRR5643661five period of Gastrodia elata0.740
SRR5643662five period of Gastrodia elata0.880
SRR5643663five period of Gastrodia elata0.220
SRR5643664five period of Gastrodia elata0.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.290
SRR6049655Rhizomagastrodiae_C368-T10_good_15.420
SRR6049656Rhizomagastrodiae_C368-T07_good_16.380
SRR6049657Rhizomagastrodiae_C368-T07_good_110.000
SRR6049658Rhizomagastrodiae_C368-T04_good_116.360
SRR6049659Rhizomagastrodiae_C368-T04_good_117.980
SRR6049660Rhizomagastrodiae_C368-T01_good_111.560
SRR6049661Rhizomagastrodiae_C368-T04_good_115.470
SRR6049662Rhizomagastrodiae_C368-T01_good_16.460
SRR6049663Rhizomagastrodiae_C368-T01_good_15.740
SRR6049664Rhizomagastrodiae_C368-T10_good_16.830
SRR6049665Rhizomagastrodiae_C368-T10_good_16.830
SRP279888GastroGastrodia elata tuber 3.59
JuvenJuvenile tuber11.93
Mother_GastroMother tuber of Gastrodia elata 2.64
Mother_JuvenMother tuber of Juvenile 11.93