Gene detail

Detail information of GWHGAAEX010471/evm.TU.scaffold_3.94_evm.TU.scaffold_3.92

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1844	8.00E-127	PHD Zn-finger proteins
nr	gi\|743773888\|ref\|XP_010917298.1\|	1.96E-157	PREDICTED: PHD finger protein MALE STERILITY 1 [Elaeis guineensis]
Swissprot	tr\|Q9FMS5\|MS1_ARATH	2.00E-127	PHD finger protein MALE STERILITY 1
trEMBL	tr\|Q67V61\|Q67V61_ORYSJ	1.00E-150	Putative male sterility 1 protein {ECO:0000313\|EMBL:BAD37958.1}
trEMBL	tr\|Q67V61\|Q67V61_ORYSJ	7.00E-12	Putative male sterility 1 protein {ECO:0000313\|EMBL:BAD37958.1}
TAIR	AT5G22260	8.00E-127	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	6549525	6699679	+

Transcript Sequence
>GWHTAAEX010471 TGCACATAGATCCTCATATTAAGAGGGATAATATTTGGTGGATAGCCCCAAGCAATAATACATTAGAGCATCTCAATCCACTCCTTAACTTAACACTAATTTAATTTAGTAATAGTGCCTCTTTATAACGTTAAACAATGATTTTCTCGGCTTAATAAAATCATGTAGGCAACATGACCTATACAATTAAACCCAAAACCCTGCTTATATATTCATCACACCGAAAGCAAGCCCAACAACAATGAGCATTAATTATGATTAAGAAAAGGCTCTAACAAGTTCGAGCCCTCCAGGAAATTTAAAATCATGGGTGCTGAACGTGTGATCTTAATTTTGGTTAGCTCTGCCTTAAGAGTCCGCCTTATTAAATGACTAACTGAGAGGTTGTGCGTGTAAGATCGATATCGGGTTGGCATGGCTAAGGCCCACATTAGTTTGAGGGGGTTGAAGAAGAGAAAGAGGGGGGATAATAGGGTTTACAGATTCGTGTCGTTCTGTAGACCCGGTGACCCGACTCACTTATGCGGCTCTTTTCAGGAGAACCTGAGCACACTGTTGGAGTTTGGCGAAGAGGAAGAAGTTATTGGCTGTGAGGCCGGGTTCAAATGCTGGTCCTTTCTTCTTCAGATTCAGCACTGTCCTACTAAGGATGTGAAGCTGTTTGTTGTTGAAGAAACTTTGGCGCCGCCGCCGCTTCGGCAGTGCCACTACTGTCGCTCTGTTGGTTGGGGAAGCCATATGATATGTTGGAAGAGAATCCACTTCGTGTTGCCCAACTCGAAAGAATCCGGAAATGGCGAAGCCAATGAGAGCTTCTCCATAGAGTTAAATGGCGCCTCGGAGTCAGACAAGCCGACGGTCGGACCGATGCTCAAAATAATGGAGGTAGAAAATCACCCGATGCACGGCATCCTGCACTCGAACGGATTCGGCCACTTGATCTGCGTCAACGGCTTCGAAGGAGGTTCGAACTTGGTTTCGGGGCACCAAATCATGAGCTTCTGGGATCGAATCTGCACCACATTGCAGGCAAGGCAGGTGAGCTTAATTGATGTGGCGAGGAAGGGAGCAATGGAGCTGAGATTGATACACGGGCTGGCCTATGGCGAGCCATGGTTCCAGCGCTGGGGCTACAGATTTGGGCACGGAAGCTTTGGAATTACTGAAGATATGCACCGGAGATCTCTTCAAGCACTTCGAGCCTGTCCGTTGACCCTGCTTATCCCTCCTCTATGCTGCGTCATTTTTGACAGGGAGGTTTTGGCTCTGCCCACAAAATATCAGTCAATTTCCGGAAAATCCATGAAAACGATGGGCGAGCTCTTCTACTGGATGATGGAACTGAGGGCCCGACTGCCTCACGAGAAGCGGCAGCCCGCCAATATGGACTTCCGCTCTGTGATTGCGTCTGCGGGTTCCTGCCGTTGGTCAATGAAGAGGGTTGAGATGGCTGCTCAAGCCATTGTTCAAGCTCTAAAGAGGGCGGAACACTGCTGGATCACAAGGCAGGATGTGAGGGATGCTGCCAGAGCTTATATTGGCGATACTGGATTGCTTGATTTTGTGCTTAAATCTCTGGGGAATCACAGCATAGGCAATTACATTGTGCGACGCATGGTGAATCCGGTTACCAAAGTCCTTGAATACAGCCTTCAGGACATCTCCACCACTCCGTGTTCGTACAACAACCGGCCAAATCTCACAAAACAAGAGCTGAACAAAGACATGCTCCACTTATACAAGCACATCCGCTTTCTCAGCATGGCAAGCGTCCGAGGCATCAAATCCGGGCAATATTCGACGCATATCGCACGTTCGCTAAACGTACTCCTCGACACCAAGCACCTTATCAAAGACTACTTCCCATCATTATTTGCGTTTGCGTGTGATAATAGTACTTACCATAATGATATAGTAATTGGCCCCGAAAATAATGGGAGGGAGGTCAGTGTCGACTGCTTGTGTGGGGCTAAGGTGGAGGATGGAGAGAGGATGGTGAGATGTGATATATGTGAGGTTTGGCAGCATACGAGGTGCGTTGGGATTCAAAGCGGCGACGAGGTTCCCTGCGTTTTTCTTTGTAAGCTTTGTGAGCCAGAGTGTGAAGTTGCCGGCAAGCTTGATGCAGTACTGAACTTTTAGTTTACGATATAGTTTATTTATATTCTTTTCATTAAAATTTAGTTAAGCAAACTTGAAGATGAATGGTATGTATGTGTGTTGATGACTATTTTATTCAAACTACTGTTAGGAAGAAGAAAACAATTGTTCTTTAATTATAGGAATGATTCTTTATCATGTGATAATCCACAATTTTGTGCTTACGATGATCTTAAGATGATAGATCATATAATGATGGATTTTATTTTCCCTACATGTGGTAGGGACGGATTCACAA

Network for GWHGAAEX010471

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.28	PHD	515	561	6.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.360
SRP064423	SRR2545915	Juvenile tuber	3.570
SRP108465	SRR5643513	five period of Gastrodia elata	6.020
	SRR5643514	five period of Gastrodia elata	4.490
	SRR5643515	five period of Gastrodia elata	5.430
	SRR5643524	five period of Gastrodia elata	5.350
	SRR5643525	five period of Gastrodia elata	2.370
	SRR5643528	five period of Gastrodia elata	6.720
	SRR5643658	five period of Gastrodia elata	2.710
	SRR5643659	five period of Gastrodia elata	5.140
	SRR5643660	five period of Gastrodia elata	4.100
	SRR5643661	five period of Gastrodia elata	4.940
	SRR5643662	five period of Gastrodia elata	3.920
	SRR5643663	five period of Gastrodia elata	3.230
	SRR5643664	five period of Gastrodia elata	3.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.750
SRP279888	Gastro	Gastrodia elata tuber	3.90
	Juven	Juvenile tuber	8.05
	Mother_Gastro	Mother tuber of Gastrodia elata	5.47
	Mother_Juven	Mother tuber of Juvenile	5.03