Gene detail

Detail information of GWHGAAEX010472/evm.TU.scaffold_3.97

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672131280\|ref\|XP_008789200.1\|	PREDICTED: protein trichome birefringence [Phoenix dactylifera]
Swissprot	tr\|Q9FG35\|TBR_ARATH	Protein trichome birefringence
trEMBL	tr\|M0SCP2\|M0SCP2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P07750_001}
TAIR	AT5G06700	Plant protein of unknown function (DUF828)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	6936393	6940122	-

Transcript Sequence
>GWHTAAEX010472 CCTGAAAGGACAATCACTGTCTCTCGATCTCTCTTTCTCCAATTCACGATGATCGGAGACGGCTGTGTGAAGAAGGGACAGGGAAAAGGAACCAATGCTTCTGATTCCTCTCGTTTCTTGGCATTGCTAAAGGCGCGGCCAACGAAGCTCTTCGCCTACGGCTTCATTATGGCCTTTGTGGGCTGCACTGCCTTCCTTGCTTTTAATCCGTCCGGAAATGGCTCTCCTTGGTTCAACTCTCTTTTCACGTCCTACTCCTTTTCTTCCTCCATTGCCCCCTACCGTTCTCACTTCAACAATCTCATCTCCCGTTTTTTCCCCAATTCCACCTCTTCCTTGATAGACGACAAGCCTTTTGGTAACGGAGAATTCGGATCTCGGAAAGGCGCCGTTTTTCTGGCCGCCCCACCAGCAAGTGTCGGTTCTGTAACTAAGTTGGAACAAAACGGTGCTGTGAGCAAAAATCGAACTGAAGCGAAGCCCGTTTCGAAGAAAGATGAAAGATTCTCTAATAAATCGGCTAATGGTGTGAATCGAACTGCGGAAGGGGTTACTTCACTGGGTTCAATGATTCAAGCTTCGAGGAGTAACTCGATTGGAAATGAACTGGGGAGTTCTGCGAAAGATGGAAGCTTTGAGAAGAAACCGCCTTTAAATCAAACAGGGCAGAACCAAACTGCCATTAAAGTTCCAGGGAAGAACTTGTCTGGAACCGAACTTGAGCAAGAAAAAAGAGTTCCTGAATCAAACAGCTTAGGAAAAGAACTGCCTTCCAAGGGAATTACTGCTACTGTCCCAAAAGAATCCAAGTCTGAAAATGTGACTTCAGTGGGTTCTGGGAATCAATCCTCAAGGAAGAAGATGTCTCCTTCTCCAGTTCAATCTAAAGAACAAACAGCTACAGAGGTCAGAGATCAAACTAAGAGTCCAGCGGCATTCATAGAACATCCGGCAAGCTCAAAGGAGAAGAAAGTTCCTGCTGCTCAAACTCTTAATGATTCTGGTAAGATGACAGCGGATTGGATCAAAGGCATGGCGAGCTGTGATATATTTCATGGAAAGTGGGTTAAAGATGATTCATACCCTCTCTATTCTGAAGGCTCTTGTCCACATATTGATGAGCCATTTGATTGCTTTCTTAATGGACGACCTGATCGAGCTTACCAGAAGTTCAGATGGCAGCCTGATGGCTGCAAGGTTCCAAGATTTAATGCGTTAGACTTGCTGGAGAGATTGAGAGGGAAGCGCCTAGTTTTTGTGGGTGATTCTCTCAACAGAAACATGTGGGAATCTCTTGTATGTGCCTTGAAGGACTCTGTGAAGAACAAGAAGAAAGTCTTTGAGGCCTCGGGCCGTCATAAATTCAGGACAGAGGGTTCCTACTCTTTCTTGTTCAAGGATTATAACTGCACTGTAGAGTTCTTCCGGTCACCTTTCCTAGTTCAGGAATGGGAAGTGCCTGATTCTAATGGAAAGAAGAAAGAAACTCTAAGGCTTGACATAATTGAGAGATCTTCATCTAGGTATAAAGATGCTAACATCTTAGTATTCAATACAGGGCATTGGTGGACTCATGAGAAGACATCTAAGGGGAGAGACTACTACCAAGAAGGCAATCGTGTTTACAGTGAATTAAATGTAGTAGAAGCATTCCATAAAGCTCTCCACACTTGGGCTAAATGGGTGGATGCCAATGTTAATCCTAATAAAACTTTCATCATCTTTAGGGGATACTCAGCCTCCCATTTCAGAGGAGGACAGTGGAACTCTGGTGGGGCTTGTGATAGAGAAACTGAGCCCATCATGAATGAGAAGTACCTATCGCCTTATCCTCCAAAAATGAGAGTCTTGGAGACAGTACTAAATGGAATGAAGACTCCAGTTTCCTATCTTAATATTACGAGAATGACTGATTTCAGGAAGGATGCCCATCCTTCCATTTATCGCAAACAGAACTTAACAGATGAAGAGAGTAGAGAGCCTGAAAGATTTCAGGACTGCAGCCATTGGTGCCTGCCTGGAGTTCCTGATTCCTGGAATGAGCTTCTTTACGCACAAATACTTATCAGACAACATCAGACACCAAATTGGTAGATCAATGAATGACGTTGGTCCGTATATTAATTCTTTTTTTTTCTTGAGCAAATAATAATGAATCTTAGAAGTTATTACATTGTTAATAGAGATGGAAAGAGTTTTATGCTGAATCGTGGAGCGCAAATTTGTTAAGTGTTTTAAGGCAGAAAGAAGATTTAGTTTGAATGAATGTCTCTATTATGTAAGGTAGTTTTGCTTATTGTTCTTACGTTTTTGATGTTTGTAAGATGACAGTGTTCTTGGATGTCTTGCTATCTTCAATTTATATTAAGTATTTTC

Network for GWHGAAEX010472

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14416.5	PMR5N	331	383	3.40E-22
PF13839.5	PC-Esterase	384	670	3.10E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.670
SRP064423	SRR2545915	Juvenile tuber	37.920
SRP108465	SRR5643513	five period of Gastrodia elata	12.030
	SRR5643514	five period of Gastrodia elata	15.810
	SRR5643515	five period of Gastrodia elata	13.700
	SRR5643524	five period of Gastrodia elata	15.970
	SRR5643525	five period of Gastrodia elata	6.920
	SRR5643528	five period of Gastrodia elata	6.820
	SRR5643658	five period of Gastrodia elata	8.340
	SRR5643659	five period of Gastrodia elata	18.940
	SRR5643660	five period of Gastrodia elata	16.850
	SRR5643661	five period of Gastrodia elata	20.720
	SRR5643662	five period of Gastrodia elata	15.820
	SRR5643663	five period of Gastrodia elata	19.780
	SRR5643664	five period of Gastrodia elata	13.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.750
SRP279888	Gastro	Gastrodia elata tuber	15.11
	Juven	Juvenile tuber	4.75
	Mother_Gastro	Mother tuber of Gastrodia elata	2.19
	Mother_Juven	Mother tuber of Juvenile	1.98