Detail information of GWHGAAEX010473/evm.TU.scaffold_3.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379731297|ref|YP_005323493.1| | 6.00E-59 | phosphatidylserine decarboxylase [Saprospira grandis str. Lewin] |
| KOG | KOG2419 | 0 | Phosphatidylserine decarboxylase |
| nr | gi|743816433|ref|XP_010930643.1| | 0 | PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Elaeis guineensis] |
| Swissprot | tr|A4GNA8|PSD3_ARATH | 0 | Phosphatidylserine decarboxylase 3 alpha chain |
| trEMBL | tr|M0RH57|M0RH57_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P10810_001} |
| TAIR | AT5G57190 | 0 | phosphatidylserine decarboxylase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 7082937 | 7195310 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010473
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 181 | 238 | 8.70E-08 |
| PF02666.14 | PS_Dcarbxylase | 414 | 609 | 4.50E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01613 | psd, PISD | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Glycerophospholipid metabolism | map00564 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008654 | Biological Process | phospholipid biosynthetic process |
| GO:0004609 | Molecular Function | phosphatidylserine decarboxylase activity |
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.370 |
| SRR2545915 | Juvenile tuber | 23.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.190 |
| SRR5643514 | five period of Gastrodia elata | 32.330 | |
| SRR5643515 | five period of Gastrodia elata | 31.000 | |
| SRR5643524 | five period of Gastrodia elata | 29.930 | |
| SRR5643525 | five period of Gastrodia elata | 15.600 | |
| SRR5643528 | five period of Gastrodia elata | 20.190 | |
| SRR5643658 | five period of Gastrodia elata | 12.120 | |
| SRR5643659 | five period of Gastrodia elata | 19.450 | |
| SRR5643660 | five period of Gastrodia elata | 20.250 | |
| SRR5643661 | five period of Gastrodia elata | 21.070 | |
| SRR5643662 | five period of Gastrodia elata | 16.420 | |
| SRR5643663 | five period of Gastrodia elata | 16.810 | |
| SRR5643664 | five period of Gastrodia elata | 17.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.06 |
| Juven | Juvenile tuber | 26.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.19 | |
| Mother_Juven | Mother tuber of Juvenile | 22.39 |