Detail information of GWHGAAEX010476/evm.TU.scaffold_3.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0251 | 6.00E-147 | Clathrin assembly protein AP180 and related proteins, contain ENTH domain |
| nr | gi|590688759|ref|XP_007043039.1| | 1.15E-154 | ENTH/ANTH/VHS superfamily protein [Theobroma cacao] |
| Swissprot | tr|Q9SA65|CAP4_ARATH | 2.00E-147 | Putative clathrin assembly protein At1g03050 |
| trEMBL | tr|A0A061E1M6|A0A061E1M6_THECC | 4.00E-155 | ENTH/ANTH/VHS superfamily protein {ECO:0000313|EMBL:EOX98870.1} |
| TAIR | AT1G03050 | 6.00E-147 | ENTH/ANTH/VHS superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 7404299 | 7413073 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010476
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07651.15 | ANTH | 32 | 300 | 1.90E-84 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048268 | Biological Process | clathrin coat assembly |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0005543 | Molecular Function | phospholipid binding |
| GO:0005545 | Molecular Function | 1-phosphatidylinositol binding |
| GO:0030136 | Cellular Component | clathrin-coated vesicle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.680 |
| SRR2545915 | Juvenile tuber | 3.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.360 |
| SRR5643514 | five period of Gastrodia elata | 12.190 | |
| SRR5643515 | five period of Gastrodia elata | 7.580 | |
| SRR5643524 | five period of Gastrodia elata | 9.220 | |
| SRR5643525 | five period of Gastrodia elata | 6.860 | |
| SRR5643528 | five period of Gastrodia elata | 5.420 | |
| SRR5643658 | five period of Gastrodia elata | 4.620 | |
| SRR5643659 | five period of Gastrodia elata | 11.080 | |
| SRR5643660 | five period of Gastrodia elata | 13.650 | |
| SRR5643661 | five period of Gastrodia elata | 12.490 | |
| SRR5643662 | five period of Gastrodia elata | 9.800 | |
| SRR5643663 | five period of Gastrodia elata | 11.500 | |
| SRR5643664 | five period of Gastrodia elata | 11.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.19 |
| Juven | Juvenile tuber | 12.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.98 | |
| Mother_Juven | Mother tuber of Juvenile | 8.79 |