Gene detail

Detail information of GWHGAAEX010480/evm.TU.scaffold_3.113

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2256	Predicted protein involved in nuclear export of pre-ribosomes
nr	gi\|672173072\|ref\|XP_008806654.1\|	PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q8LNU5\|NOC2L_ORYSJ	Nucleolar complex protein 2 homolog
trEMBL	tr\|K4A6D2\|K4A6D2_SETIT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si034436m}
TAIR	AT2G18220	Noc2p family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	7633459	7666909	+

Transcript Sequence
>GWHTAAEX010480 AAAAAAAAAAAAAACCTAAATTATCTTCTCCTCAGCCGAATGCTTCTCCTCTACGCGAGCCGGTCTTTCCTCTCAATTCGGCGAAGGAGTTCGTCGGCCTCCTCCTCGCCTCCACCACCGCCGTCCTCTTCCTTCTTCCAGGCATCGGCGACGACGCTGCTTTTCTCAGCTTCGAAAGATTCGAATCCTCCCGCATTTGAGATGGTTGCCGAGTCTTCTTAGAGTCGCAGCCGAGTGGCCGATCGGTCCTCCCTGCTAGCAACCGATCAAATTTTATCGAGTTGATGATGTCTGACCCGGAGGATTCTGGAGAAAGCTTAGCCAATTCTCGACAAACAACTATGGAGCACATGAAACAATTGCAAAGGCTTCAGGAGAAGGATCCAGAATTTTATCAGTTCTTAAAAGAACATGATAAAGAACTATTGGAGTTCAACGATGAAGATATTTTAGATAATGAAGTATCTGATTTGGAGGAGGATGTGGATTGTAAACCTACTACAGAGCATCAGACACCATCTGCCAAAGTGATTACCTCAGTTAGTGTTGATTCCTGGTGCCATTCAATTAAACAAAAAAGAAGTATTGGTTCTATCAAGTCGATGCTTCGAGCTTTCAGAACAGCATGCCACCACGGTGATAATGTTGAAGATGGTTCAGGGCAGAAGTTAGCCATACTTACGAGTAGTGTGTTCAATAAAATAATGGTGTTTGTTCTAAATGAGATGGATGGAGTTCTTCGTACTTTGTTGGAAGCTCCATCTACTGGAGGTAAGAAGGAAACAATACTGGATCTGATGACTACTAAAGCATGGAAAACTCATGGAAATTTAATGAGGGTTTATCTTGGGAATGCACTTCATATTTTGAATGAAATGACTGATGAGCAGATGATGTCTTTCACTTTGAAACGACTAAAAGCATCTGCAGTATTTCTGGCAGCATTCCCTGTGCTCTTAAGGAAATATATCCGGGTAGTGCTTCATACTTGGGGTACAGGCACCGGTGCACTTCCGGTCGTTTCCTTTTTTTTCCTTAGAGATTTGTGCGTGCGGCTTGGTTCGGATTGTCTTGAGTCATGCCTTAAGGGCGTGTATAAGGCATATGTAATGAATTGTAAGCTACAAAAACATATTAGTAGGCCAAAGCTGCAGCACATTAATTTTCTTGGAAATTGTATCAGTGAATTGTATGGTTTGGACCCAACAAGTGCATATCAGTATGCTTTTCTCTCTATTCGTCAATTAGCAGTTGTTTTACGTGGCGCGATTAATGAGAGGGGTACTCAGACTCTGAAAGGGAAGAGGAAAGGGAACAATCTACAACAGATCAGTAAGCCTTCGAAGAAACAAGTTGAGAAATCATACCAGAAGGTTTATGATTGGCAATATCTTTTTTGTCTTGAACTGTGGACGAAAGTTATTTGTGCCCATAATTCAGAAGCTGATTTTCGACCTTTAGCATATCCGCTTACTCAGATAATTTTTGGAATGGCTACTTTGGTCCCATCTGCTCGTTACTTTCCACTTCGTTTGCGTTGCGTAAGGATGCTGAATCTTATAGCTGGAGCTACTGATATGTTTATACCAGTAAATACAATCTTGCTCGATATGCTAGACATGAAGGTGTTAGATAGACCTCCTACAGGTGGTGTTGGCAAAGCTGTTGATTATCAAGGGGTTAAACAGTTGGACAAGTTGACTTTGAGAACACGTGCTTTTCAAGAGGCATGCATATATGCTGTTGTTGAAGAGCTTGCTGAACATTTTGCACAGTGGAGCTGTTCTGTTTCCTTCTTTGAGCTGTCTTTTATTCCACTGGCACGGCTGCGAACCTTTTGCAAGTCAACCAAAGTTGATAGATTTCGAAGAGAAATAAGAGAACTCGTACGCCAGCTTGAAGTCAATTGTGAATTTACAAATTCAAGGCGCTTTCAAATCAATCTTTCACCGAGTGATCCTGCAGCAGCAACGTTTCTTGAGGCTGAAAAGAAGTCGAAAAACAGTCCTCTATTGCAGTTTGTTTCTAATTTGCATATGCGAGTTCAACAAAGAACTGGTTCCATGGTGGAATCCAGTGTCCTGGTGGGAGCAGAATCATCTGTATTTGGCAACAAATTTTTAGAAACAAGCCATGAAATACAAGTAGAGGAAGGAGATGATGGCGTGGCAGCTTTCAGCTCATCCTGGATGCCTGATAAAAAGTCGAAGCCTTCTAAACAGAAGATAAAGAAAAAGCGAGAACCTCGAAGAGCATTGGATGAGGATGTAGTTGAGGATCTTGTTTTAAGTTCTGATGAGGAAGATGATGATGATGATAATGATGATGATGTGAACAGTCATGGCCATGATGAGGCAGCTATTTTCAGTGATTCTTGGAATGAAGCGGAAGTTGGTCAAGAGTCGCTTAAAGGTAAAACTAAAAGGAACAGAAAGCGAAAGAGGGGGGATTTTCAAGCTAAGAACAAGAAAGAAATGTCAGGAGGTACTGAGTTAAAGAAAAAGAAGCAGCATAAGGGTCGCATCGTCCTATGAAACGGACATTAACATAGTTTATAATTTGCCAAGACACTGATACTTATCAAACGGATCTCATTGTTTTTTGCAGTAAAAAAAGGTTTATTTGTTCAATTTTATAAACAATTCCCAGCATTGGATTTCTGTGCATACATTTTCTTTGAATCAATTAATACGTCTTATTTGATTAAAAAGAAGCCCTTCAAGTAAATTTGATTATGTAGTCTGTATCCTGCAACATGAATGATATAATGTCTTGATCCATTGATTTAAATTTTATATAGTTTTTTTGTTTATTTCTGGAATATTCAAGTACATGACATTGACTTTATTTTTGTATTTTAATGCTCAAATTTAATATTTTCAGATTTAATAAAG

Network for GWHGAAEX010480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03715.12	Noc2	262	582	3.00E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.970
SRP064423	SRR2545915	Juvenile tuber	38.020
SRP108465	SRR5643513	five period of Gastrodia elata	33.890
	SRR5643514	five period of Gastrodia elata	34.730
	SRR5643515	five period of Gastrodia elata	35.420
	SRR5643524	five period of Gastrodia elata	39.400
	SRR5643525	five period of Gastrodia elata	28.520
	SRR5643528	five period of Gastrodia elata	27.230
	SRR5643658	five period of Gastrodia elata	31.150
	SRR5643659	five period of Gastrodia elata	31.620
	SRR5643660	five period of Gastrodia elata	30.060
	SRR5643661	five period of Gastrodia elata	27.970
	SRR5643662	five period of Gastrodia elata	28.380
	SRR5643663	five period of Gastrodia elata	30.420
	SRR5643664	five period of Gastrodia elata	28.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.780
SRP279888	Gastro	Gastrodia elata tuber	48.94
	Juven	Juvenile tuber	56.32
	Mother_Gastro	Mother tuber of Gastrodia elata	58.11
	Mother_Juven	Mother tuber of Juvenile	60.92