Detail information of GWHGAAEX010484/evm.TU.scaffold_3.121


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|2.00E-16RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01497.00E-61Predicted RNA-binding protein SEB4 (RRM superfamily)
nrgi|672201669|ref|XP_008778197.1|1.15E-102PREDICTED: RNA-binding protein 24-like [Phoenix dactylifera]
Swissprottr|Q9SHZ6|UBA1A_ARATH1.00E-21UBP1-associated proteins 1A
trEMBLtr|W9S430|W9S430_9ROSA5.00E-90RNA-binding protein 38 {ECO:0000313|EMBL:EXC13675.1}
TAIRAT2G467807.00E-61RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000284089618411220+
Transcript Sequence

Network for GWHGAAEX010484

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_130883.60E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.130
SRR2545915Juvenile tuber8.770
SRP108465SRR5643513five period of Gastrodia elata4.340
SRR5643514five period of Gastrodia elata3.710
SRR5643515five period of Gastrodia elata3.790
SRR5643524five period of Gastrodia elata2.630
SRR5643525five period of Gastrodia elata3.830
SRR5643528five period of Gastrodia elata3.190
SRR5643658five period of Gastrodia elata11.560
SRR5643659five period of Gastrodia elata4.880
SRR5643660five period of Gastrodia elata3.140
SRR5643661five period of Gastrodia elata4.470
SRR5643662five period of Gastrodia elata3.500
SRR5643663five period of Gastrodia elata4.650
SRR5643664five period of Gastrodia elata3.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.160
SRR6049655Rhizomagastrodiae_C368-T10_good_114.660
SRR6049656Rhizomagastrodiae_C368-T07_good_114.040
SRR6049657Rhizomagastrodiae_C368-T07_good_110.360
SRR6049658Rhizomagastrodiae_C368-T04_good_15.270
SRR6049659Rhizomagastrodiae_C368-T04_good_13.600
SRR6049660Rhizomagastrodiae_C368-T01_good_17.210
SRR6049661Rhizomagastrodiae_C368-T04_good_18.300
SRR6049662Rhizomagastrodiae_C368-T01_good_110.210
SRR6049663Rhizomagastrodiae_C368-T01_good_16.190
SRR6049664Rhizomagastrodiae_C368-T10_good_112.950
SRR6049665Rhizomagastrodiae_C368-T10_good_112.950
SRP279888GastroGastrodia elata tuber 3.02
JuvenJuvenile tuber6.64
Mother_GastroMother tuber of Gastrodia elata 3.70
Mother_JuvenMother tuber of Juvenile 2.47