Gene detail

Detail information of GWHGAAEX010486/evm.TU.scaffold_3.123

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694830\|ref\|YP_008797884.1\|	1.00E-10	conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0250	0	DNA repair protein RAD18 (SMC family protein)
nr	gi\|743778236\|ref\|XP_010919572.1\|	0	PREDICTED: structural maintenance of chromosomes protein 6B [Elaeis guineensis]
Swissprot	tr\|Q9FLR5\|SMC6A_ARATH	0	Structural maintenance of chromosomes protein 6A
trEMBL	tr\|M0SY67\|M0SY67_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P13380_001}
trEMBL	tr\|M0SY67\|M0SY67_MUSAM	3.00E-40	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P13380_001}
trEMBL	tr\|M0SY67\|M0SY67_MUSAM	7.00E-08	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P13380_001}
TAIR	AT5G07660	0	structural maintenance of chromosomes 6A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	8437800	8554618	+

Transcript Sequence
>GWHTAAEX010486 TGGCAGGTTGGTTTCCGTTCGGGTCTGACCCAATACACAAATAGAGACTCGGCCCAATCTATTTTGGCGGGCGGCTTCTGTTGCCCTAGTCCCTTTCGTTTACCGGGTCTTCCGTTCCTTCCACCAGGAATCTGCTCCTCACTATCCACTTTCTTCGACTCGTCTCTGTACACTTTGTTCCAAGCCATATGGAGGAATCTAGGTTTTCACCCGAGCTTCGGGTGAGCCCTGTCAAGTCGGGAGCTGGAATCATATCGAGGATTCGACTGGAGAACTTCATGTGTCACAGCAGCCTACAAATCGATCTCGGAGACTGGGTGAACTTCATCACAGGCCAGAACGGAAGCGGAAAAAGTGCGATATTGACTGCGCTTTGCGTGGCGTTTGGTTGCCGGGCCAAAGGCACGCAAAGGGCAAAAACTTTGAAAGATTTTATAAAGACTGGATGCAGCTATGCTGCTATTTTTGTGGATATTAAAAATGAAGGAGAAGATGCATTCATGTTTGAAACATATGGCAACAAGATAATCGTGGAGCGTCGAATTACTGAATCAAGCAGCTCAATCACTTTGAAGGACCATCAGGGAAGAAAGGTTGCTCAACGGTCCAAAGAGCTTGATGAGCTTGTAGATTATTTTAATATTGATGTTGAGAATCCTTGCGTTATAATGTCTCAAGATAAAAGCAGGGAGTTCTTACATTCTGGGAGTGACAAGGATAAGTTTAAGTTTTTTTTCAAGGCCACTCTTCTTCAACAAGTTAGTGAGCTACTTGAGGGTATTAAAAGTCAATTGAGTGCAGCTGATGCTGTACTTACTGAATTAGAATCATCAATACGCCCTGTAGTTGAAGAGCTGAAAGAGTTACGTGAGAAAATCAAGAACATGGAGCACGTTGAAGAAATTGCTCAGGAGGTGCAAAACTTGAAGAAAAAATTAGCTTGGTCATGGGTGTATGATGTTGATAGACAAATTACTGATCAAAATGTTAAGCTTGAAAAGCTTAATGACCGCATTCCCACTTGCCAAGCTAGAATTGACCGGTTATCAGGCAGGCTAAATGAACTCAGGAGATTACTTGATGATAAAAAGGCCCAAATTACATCATTGATGGAGAAGACCTCTGATGTCAGGAGAATGAAAGAAGAGTTGCAAAATAATCTTTTATTGGCTAAGAAGGAAAAAGCAGAGCTAGAAGCTGAGTATTCTCGGGGTGATTCTTTATTTGTAAAATTGAGGAATCGTGTTAGGTTGCTTGAGCAGCAAATTCATGATACTCAGGAGCAACACTTGAAAGATACACAGGCCGAGGAAACTGAGCTTGAGGAACGAATGCAGAAACTGCAAGATGAAATTACTGTGGCTGAAAGAAATGTTTCAAGGTTGCAGGACGAACAGAAGGTTTTAACTGAAAAATTATTATATTCAAGAGAAGCTATACTGGAACTTGAAAAAGAGGTTCAAGATAATGAGAAAAAATGTCATGGCCTGTATTCTCAATTGCAAGCACTCAATCAACAGCAAACTAACAAGGTTACTGCATTTGGAGGGAATAAGGTTCTCAGCCTCTTACATGCCATTGAGAGGCACCATAGAAAATTTAAATGCTCTCCAATTGGCCCAATTGGTGCTCATGTGTCTTTGGCAAACAGTGACATTTGGGCTTTAGCAGTTGAATGTGCTATTGGAAGGTTATTAGATGCTTTTGTTGTCACTGATCATAAAGACTCACTTGTTCTAAGAGCTTGTGCTAGAGAAGCAAATTATCATAATCTTCAGATAATTGTCTATGATTTCTCTAGACCGAGGCTTAATATTCCCAGTCACTTGCTTCCTTCAACTAGTCATTCAAGTGTTATCTCAGTTTTACATACAGAGAATCCTACCATATGGAATGTATTAGTAGACATGGGTAGTGCTGAAAGACAAATTCTCGTTCCGAATTATGAGATAGGAAAAACGGTTGCTTTTGTCCAGAAAATTCAAAATTTGAAGGAGGTTTACACTTCTGATGGATACAGAATGTTTTATCGGGGTTCCGTTCAGACTACACTTCCACCGAACAAGAGAAGTAGGAATGGTCGACTTTGCAGTTCCATTGAAAATCAAGTTGTTGATCTTGAGAAAGAGACAGATATTGTTCGGGAGAAGATTAAAGATGGAAAAGAAAGAAAAAGAAATGCTGATATTCAATTACGGAAACTTGACGAGAGGCGGATGACTGAAGAAAGAATATTGATGTCTAAACAACTAACATGGAAAGATTTGAAGTGCTCTCATTCTACTGAGGCTACTACTGATGCAGCAACAACTGTGGTGGAACTTAATCAGGAAATCACTTGGCAATCATTGGCTTTTGGTTATGCTTACAGATTTACAGAATCCATAGATGATCTCAGGCATTTGCATGATAAAAAGGAGCGTAAAATAACTAAAAAACAGCAAATGTATACAGCTTTTCATGACAAGCTAAAAGCATGTGAAAAAGCACTTGAAATGCGATGGAGTAAGTTTCACAGAAATGCCAATTTCTTGAAGCGTGAGTTAACATGGAAGTTTAACGGGCATTTATTGAAGAAAGGCATATCTGGAAAAATTATGGTTGATTACGACAAGAGAGTTCTCACCGTTGAGGTAAAAATGCCTCAAGATGCATCCGGAAACAATGTCAGAGACACCAGAGGGCTTTCAGCTAAAATCATGGTTTCAGTGCAAAAATGCTTTTCTGATAAATTTCTTTTTTTGAGGTTTTATCGGGGTTCCGTTCAGACTACACTTCCACCGAACAAGAGAAGTAGGAATGGTCGACTTTGCAGTTCCATTGAAAATCAAGTTGTTGATCTTGAGAAAGAGACAGATATTGTTCGGGAGAAGATTAAAGATGGAAATGAAAGAAAAAGAAATGCTGATATTCAATTACGGAAACTTGACGAGTAA

Network for GWHGAAEX010486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13476.5	AAA_23	24	250	4.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0051276	Biological Process	chromosome organization
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding
GO:0005694	Cellular Component	chromosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.920
SRP064423	SRR2545915	Juvenile tuber	11.980
SRP108465	SRR5643513	five period of Gastrodia elata	8.570
	SRR5643514	five period of Gastrodia elata	9.630
	SRR5643515	five period of Gastrodia elata	9.460
	SRR5643524	five period of Gastrodia elata	10.650
	SRR5643525	five period of Gastrodia elata	11.110
	SRR5643528	five period of Gastrodia elata	7.570
	SRR5643658	five period of Gastrodia elata	11.020
	SRR5643659	five period of Gastrodia elata	8.140
	SRR5643660	five period of Gastrodia elata	8.020
	SRR5643661	five period of Gastrodia elata	7.220
	SRR5643662	five period of Gastrodia elata	7.100
	SRR5643663	five period of Gastrodia elata	7.740
	SRR5643664	five period of Gastrodia elata	7.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.440
SRP279888	Gastro	Gastrodia elata tuber	9.72
	Juven	Juvenile tuber	13.63
	Mother_Gastro	Mother tuber of Gastrodia elata	8.94
	Mother_Juven	Mother tuber of Juvenile	12.98