Detail information of GWHGAAEX010490/evm.TU.scaffold_3.127


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|719976376|ref|XP_010248511.1|9.27E-80PREDICTED: RNA-binding protein 48-like isoform X2 [Nelumbo nucifera]
trEMBLtr|D7TDI3|D7TDI3_VITVI7.00E-79Putative uncharacterized protein {ECO:0000313|EMBL:CBI28556.3}
TAIRAT2G277902.00E-45RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000287210608747792-
Transcript Sequence

Network for GWHGAAEX010490

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_136930.00016
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.810
SRR2545915Juvenile tuber64.150
SRP108465SRR5643513five period of Gastrodia elata32.170
SRR5643514five period of Gastrodia elata28.340
SRR5643515five period of Gastrodia elata30.220
SRR5643524five period of Gastrodia elata27.310
SRR5643525five period of Gastrodia elata34.520
SRR5643528five period of Gastrodia elata26.170
SRR5643658five period of Gastrodia elata25.210
SRR5643659five period of Gastrodia elata51.690
SRR5643660five period of Gastrodia elata60.410
SRR5643661five period of Gastrodia elata59.810
SRR5643662five period of Gastrodia elata64.140
SRR5643663five period of Gastrodia elata58.920
SRR5643664five period of Gastrodia elata61.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.840
SRR6049655Rhizomagastrodiae_C368-T10_good_132.620
SRR6049656Rhizomagastrodiae_C368-T07_good_124.370
SRR6049657Rhizomagastrodiae_C368-T07_good_130.880
SRR6049658Rhizomagastrodiae_C368-T04_good_123.680
SRR6049659Rhizomagastrodiae_C368-T04_good_129.220
SRR6049660Rhizomagastrodiae_C368-T01_good_125.260
SRR6049661Rhizomagastrodiae_C368-T04_good_125.320
SRR6049662Rhizomagastrodiae_C368-T01_good_125.160
SRR6049663Rhizomagastrodiae_C368-T01_good_123.450
SRR6049664Rhizomagastrodiae_C368-T10_good_127.190
SRR6049665Rhizomagastrodiae_C368-T10_good_127.190
SRP279888GastroGastrodia elata tuber 59.36
JuvenJuvenile tuber40.30
Mother_GastroMother tuber of Gastrodia elata 42.03
Mother_JuvenMother tuber of Juvenile 38.74