Detail information of GWHGAAEX010494/evm.TU.scaffold_3.132
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37523751|ref|NP_927128.1| | 2.00E-32 | chloride channel protein [Gloeobacter violaceus PCC 7421] |
| KOG | KOG0474 | 0 | Cl- channel CLC-7 and related proteins (CLC superfamily) |
| nr | gi|743815993|ref|XP_010930514.1| | 0 | PREDICTED: chloride channel protein CLC-c-like [Elaeis guineensis] |
| Swissprot | tr|Q96282|CLCC_ARATH | 0 | Chloride channel protein CLC-c |
| trEMBL | tr|J3LY69|J3LY69_ORYBR | 0 | Chloride channel protein {ECO:0000256|RuleBase:RU361221} |
| TAIR | AT5G49890 | 0 | chloride channel C |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 8971060 | 9000922 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010494
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00654.19 | Voltage_CLC | 148 | 563 | 5.10E-89 |
| PF00571.27 | CBS | 596 | 655 | 0.0067 |
| PF00571.27 | CBS | 711 | 761 | 0.00027 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006821 | Biological Process | chloride transport |
| GO:0005247 | Molecular Function | voltage-gated chloride channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.610 |
| SRR2545915 | Juvenile tuber | 4.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.480 |
| SRR5643514 | five period of Gastrodia elata | 9.390 | |
| SRR5643515 | five period of Gastrodia elata | 6.890 | |
| SRR5643524 | five period of Gastrodia elata | 8.950 | |
| SRR5643525 | five period of Gastrodia elata | 14.970 | |
| SRR5643528 | five period of Gastrodia elata | 24.070 | |
| SRR5643658 | five period of Gastrodia elata | 15.450 | |
| SRR5643659 | five period of Gastrodia elata | 4.100 | |
| SRR5643660 | five period of Gastrodia elata | 4.400 | |
| SRR5643661 | five period of Gastrodia elata | 3.710 | |
| SRR5643662 | five period of Gastrodia elata | 2.410 | |
| SRR5643663 | five period of Gastrodia elata | 3.200 | |
| SRR5643664 | five period of Gastrodia elata | 2.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.98 |
| Juven | Juvenile tuber | 5.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.38 | |
| Mother_Juven | Mother tuber of Juvenile | 17.66 |