Gene detail

Detail information of GWHGAAEX010498/evm.TU.scaffold_3.141

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|410671912\|ref\|YP_006924283.1\|	4.00E-08	RNA-binding protein [Methanolobus psychrophilus R15]
KOG	KOG2522	0	Filamentous baseplate protein Ligatin, contains PUA domain
nr	gi\|672126032\|ref\|XP_008786454.1\|	0	PREDICTED: eukaryotic translation initiation factor 2D-like [Phoenix dactylifera]
trEMBL	tr\|M0S5F2\|M0S5F2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P05610_001}
TAIR	AT1G71350	0	eukaryotic translation initiation factor SUI1 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	9605747	9652760	+

Transcript Sequence
>GWHTAAEX010498 GCAGTATCCATTAAATTGTATATGCTCCACAGATTAAGCCCAAGTCATACCAAAAGATTTAACTCTGAATCACCCCATCCTTCCTTGTTTTATTTTTAATTTCTTAAATATTACGAATCTATTCAGCATCTCTTGCAATATGTTCTTAAATCGCTGAATCATACAAATATTAGATTCCAGACGATTTTACTACTTTTTTCGCAGTTCCGGGATTTGAACGCAACAACAGAGGATTTGGATTTACGTTAAATTCTCCTAAGACCGTGGCTTCCACCTCTCTCTAGCTGCACGCCATGTTCAAGAAGACGATAGAAACAAAAGCACTGCAGCGCTTGTCCGGTGCCGATAGAAAGAAACTAAGAAGAGCCGCCAAGGAACGATTTCCCCTGGCTTCTGATGCTGACATTGATGCTATTCTTCCTCTTAGGGCAGAGATAACAGTGGCGAAGCTTTCAAACCGTGCATATCTATATGGAGTGGAGGGAGGACTTCCAGTGCTTTTTGATGTGGATGGGAGAGGCAATGACATATTTCCAACAGTGTATGCGCTCTGGGAGGTCCCAGCCCTTCTACCTGCTTTTGTGCTTAAAGCATGTGAGGTCTCTCGCTTTGTTATTGGAGGTGCTGATTTGATGTTTCCTGGGATTAGCATACCGTCAGAGGGCTTTCCATCCTTCTTAGCAGGTGAACCATGGGCAGTGAAAGTCCCCGGCAATGCAGCACCTATTGCAGTTGGGATGACCACAATGAGCAGGGCGGAGGCACTAAAAGTTGGTTTACGTGGCAAAGCTCTGCGTGTCTTGCATTATTATCGTGATTTTTTGTGGGAATTGGTTGAAGGTCGATGCATTCCAAATGAGGGTTTCCTGGAGGATATTGTCGTAGAAGATCCTGCTTTATATACAACTACTCAAATATGTTATGCTTCTGGAAATGTCTTAAATGATACACTTGGTTCTGTCTCTAACAACAATGAGCAGCAACATGATATTTCAATTGTCCATGCTGAAGAGGTTACTCATTCTCTGCAAGGGGATTCTAAGAACGATGACTGGGTGGAAATTGCAGATGTCATGACCAGGCTAAATGTGTTGGAAAGTGTTCCAACCGACGAGCAAAACGAAGTAATGGTACATGTGGTGCTCTCAACCGAAATAGATGCTCTATTAGATAAATGTCTCTTGCAAGCATTGCACACGTCTGTCAAAGATAAAGACCTTCCATTGTCTGGAAGCTTACTTTGGTCAAATCATGTGTTGACTTGCAGGCCTGCAGGAATCACTCTGGACATAAAGAAATCATCTCATAAGAAACTTTCAAAATGGTTGCAGTCAAAGTCTTTGGTTGGTTTGATATCAACAAAGGAAGACAAGTACAAGAAGGAAATTATTTTACTTTCTGTGAACCGTACACATCCAGAATATCTATCTTTCAAGCTAGAGAAACAGGCACCAGAAGCTATTGATCCAAGGCCTGATTCATCTGTAGGTGATGTTCGCCAAACTACACAGCTTGAGGTTTCTGAGATTTACAAATCAAGCACACATGTCAATTTCATATTTGCATCTGTTGGTGCTGATACTGGAAAATATTACACTGCTTCTGAAGCAAATGATGTTGTCTTTAGATACATAGAGAAGGAAAATTTGGTCCATTCTAAGGACAAAGCGATAGTGGTTTTAGATGCCATCCTTTGTGATGCCCTTTTCAAGGGAGCCATTAAAAAGGGGGCAATGTACCCTACGGAAATTCATAAGAAGGATCTTGGGGCAGCATTTCTGAATCGGTTGCAAGCATTCCACAGGGTCTCAAGGGACAATGAGGTTGCTCTTCGTAAGGGCTCCATTAGGCCTATACAAATTCTGGCTGAACGTAGGCAGGGAAGCAAGAAAGTGACCAGAGTCTCAGGTATTGAATATTTCTTAATGGATGCTGACTCATTGGCTTCTGAACTGCAAAAGAAATTTGCATGTAGTACTTCAGTAGCTGAGCTTCCAGGCAGAAAGGGACAGCATGAGGTGCTTGTACAGGGCGGAGTGATAGACGATCTTGCCAAACTTCTTGTTGATTATGGCGTTCCCAAACGGTACATTGAGGTGCTCGATAAAACCAGGAAATAAGAGGAAAAACTCCATACAGAATGAAACCCTATTGTAACTGCTGTCCTATATTGTAATAACCCATTTGCAGTCATTGCGATATACTGAAATGATCCCGAAATGAAATGCATATAGCATGTATGTCTGAATAGTGTATTCATGTATCATGTGGTTTTATATTTTCAAATTGGGGAAAACTACAAAGTTGTCACTTTGCTTGTCTGGTTCTGACCCAGCTTACAAAAATTTTAGTTAGAAACTATAATTTTTAAGCTGATGCTTGCTCACTCGACAACATTGGGCTCCCCCTAGGGAGTTAGAAACTTAATTGAGCTTAGCCAATCTGTGCTCCGCACCCCAACAAATTTTAGTTTTATATAAAGTTTGGGTGGATGCTTATATTTATTGTGTATTAATCAA

Network for GWHGAAEX010498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01253.21	SUI1	519	596	1.30E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006413	Biological Process	translational initiation
GO:0003723	Molecular Function	RNA binding
GO:0003743	Molecular Function	translation initiation factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.980
SRP064423	SRR2545915	Juvenile tuber	44.550
SRP108465	SRR5643513	five period of Gastrodia elata	23.990
	SRR5643514	five period of Gastrodia elata	33.530
	SRR5643515	five period of Gastrodia elata	24.930
	SRR5643524	five period of Gastrodia elata	28.010
	SRR5643525	five period of Gastrodia elata	31.840
	SRR5643528	five period of Gastrodia elata	30.450
	SRR5643658	five period of Gastrodia elata	36.710
	SRR5643659	five period of Gastrodia elata	24.510
	SRR5643660	five period of Gastrodia elata	27.560
	SRR5643661	five period of Gastrodia elata	25.220
	SRR5643662	five period of Gastrodia elata	25.260
	SRR5643663	five period of Gastrodia elata	24.850
	SRR5643664	five period of Gastrodia elata	25.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.990
SRP279888	Gastro	Gastrodia elata tuber	25.44
	Juven	Juvenile tuber	26.52
	Mother_Gastro	Mother tuber of Gastrodia elata	17.11
	Mother_Juven	Mother tuber of Juvenile	18.29