Detail information of GWHGAAEX010501/evm.TU.scaffold_3.150
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743871238|ref|XP_011033804.1| | 1.99E-50 | PREDICTED: ethylene-responsive transcription factor ERF026-like [Populus euphratica] |
| Swissprot | tr|Q9SJR0|ERF24_ARATH | 3.00E-37 | Ethylene-responsive transcription factor ERF024 |
| trEMBL | tr|B9GW61|B9GW61_POPTR | 9.00E-51 | AP2 domain-containing family protein {ECO:0000313|EMBL:EEE79445.1} |
| TAIR | AT2G36450 | 1.00E-36 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 10200370 | 10201111 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010501
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 73 | 121 | 1.60E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.220 |
| SRR2545915 | Juvenile tuber | 1.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.770 |
| SRR5643514 | five period of Gastrodia elata | 1.520 | |
| SRR5643515 | five period of Gastrodia elata | 18.570 | |
| SRR5643524 | five period of Gastrodia elata | 0.770 | |
| SRR5643525 | five period of Gastrodia elata | 2.330 | |
| SRR5643528 | five period of Gastrodia elata | 0.960 | |
| SRR5643658 | five period of Gastrodia elata | 1.850 | |
| SRR5643659 | five period of Gastrodia elata | 7.010 | |
| SRR5643660 | five period of Gastrodia elata | 7.320 | |
| SRR5643661 | five period of Gastrodia elata | 11.200 | |
| SRR5643662 | five period of Gastrodia elata | 6.040 | |
| SRR5643663 | five period of Gastrodia elata | 7.520 | |
| SRR5643664 | five period of Gastrodia elata | 39.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.33 |
| Juven | Juvenile tuber | 0.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.16 | |
| Mother_Juven | Mother tuber of Juvenile | 0.48 |