Detail information of GWHGAAEX010502/evm.TU.scaffold_3.153


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27242.00E-77Nuclear pore complex component NPAP60L/NUP50
nrgi|743777546|ref|XP_010919209.1|2.09E-112PREDICTED: uncharacterized protein LOC105043382 isoform X3 [Elaeis guineensis]
trEMBLtr|M0RNZ6|M0RNZ6_MUSAM2.00E-108Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P03160_001}
TAIRAT4G117902.00E-77Pleckstrin homology (PH) domain superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000021038796810441760+
Transcript Sequence

Network for GWHGAAEX010502

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00638.17Ran_BP12854102.10E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14295NUP50, NPAP60 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0046907Biological Processintracellular transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.540
SRR2545915Juvenile tuber34.110
SRP108465SRR5643513five period of Gastrodia elata16.370
SRR5643514five period of Gastrodia elata16.730
SRR5643515five period of Gastrodia elata18.100
SRR5643524five period of Gastrodia elata16.220
SRR5643525five period of Gastrodia elata12.520
SRR5643528five period of Gastrodia elata13.440
SRR5643658five period of Gastrodia elata14.430
SRR5643659five period of Gastrodia elata14.460
SRR5643660five period of Gastrodia elata19.360
SRR5643661five period of Gastrodia elata15.830
SRR5643662five period of Gastrodia elata14.750
SRR5643663five period of Gastrodia elata14.970
SRR5643664five period of Gastrodia elata15.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.040
SRR6049655Rhizomagastrodiae_C368-T10_good_122.810
SRR6049656Rhizomagastrodiae_C368-T07_good_120.070
SRR6049657Rhizomagastrodiae_C368-T07_good_122.150
SRR6049658Rhizomagastrodiae_C368-T04_good_121.640
SRR6049659Rhizomagastrodiae_C368-T04_good_130.890
SRR6049660Rhizomagastrodiae_C368-T01_good_123.860
SRR6049661Rhizomagastrodiae_C368-T04_good_122.850
SRR6049662Rhizomagastrodiae_C368-T01_good_120.020
SRR6049663Rhizomagastrodiae_C368-T01_good_123.380
SRR6049664Rhizomagastrodiae_C368-T10_good_120.600
SRR6049665Rhizomagastrodiae_C368-T10_good_120.600
SRP279888GastroGastrodia elata tuber 18.93
JuvenJuvenile tuber18.32
Mother_GastroMother tuber of Gastrodia elata 15.40
Mother_JuvenMother tuber of Juvenile 11.68