Gene detail

Detail information of GWHGAAEX010504/evm.TU.scaffold_3.157

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|333909964\|ref\|YP_004483697.1\|	1.00E-70	deoxyhypusine synthase [Methanotorris igneus Kol 5]
KOG	KOG2924	1.00E-139	Deoxyhypusine synthase
nr	gi\|237823189\|emb\|CAR31338.1\|	2.64E-161	homospermidine synthase [Phalaenopsis amabilis]
Swissprot	tr\|Q9AXQ9\|DHYS_MUSAC	9.00E-143	Deoxyhypusine synthase
trEMBL	tr\|C4PLB2\|C4PLB2_PHAAB	1.00E-161	Homospermidine synthase {ECO:0000313\|EMBL:CAR31338.1}
TAIR	AT5G05920	1.00E-139	deoxyhypusine synthase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	10660989	10671234	+

Transcript Sequence
>GWHTAAEX010504 GTCTTCATCTAAATGGGTGCAGCCGCGGGTGAAGGAGAGAGAGAGTTGGTGAAGTCCTTGGTTTTCAAGGAATCTTCAGCCCTCGAATGTTTAAAGATTGGCGGCTATGATTTCAACAATGGCCTCGACCTTCCCGCCCTTCTCAACTCCATGCTCTCCACTGGCTTCCAGGCCACGAACCTTGGGGAAGCCATGGACGTCGTTACCCAAATGATAAACTGGAGGCTGGCGCATGATGAGCCGTCGGAGGATTGCAGCGAAGAGGAGAGAGAGGCGGGTTTTAGGGAGTCCGTCAAGTGAAGATATTTCTGGGTTTTACCTCTAATCTCATTTCCTCTGGAGTCAGAGAGACAATAAGGTTCTTAGTGCAGCATCGCATGGTTGATGTGCTTGTGACAACAGCTGGGGGGATTCAGGAGGATCTCATTAAATGTCTCGCCCCCACCTTCAAAGGAGATTTCTCTCTTGCAGGAACTTTCCTGCGCTCCAAAGGATGGAACAGGATCGGCAACCTGCTGGTGCCTAATGACAATTACTGCAAATTCGGGGATTGGATTATGCCCATTCTTGATCAAATGCTCCAGGAACAAACTGCTGAGGGTGCACATTGGACACCCTCAAGAGTTATCGCTCTCTTGAGAAAAGAGGTAAAGGATGAAAGCTCTTATTTGTATTGGGCGTTTAAGAATGGAATACCGGTCTTCTGCCCAGCAATCACTGACGGATCCATAGGGGACATGCTGTACCTCCATTCTTCGCGCAGCCCTGGCCTCATCATCGATCTTGTTCAAGATGTGAAAGCGATGGATGAAGAAGCGATAGATGCAAGCCCAAGGAAGACTGGTCTCATAATCCTTGGAAGCGGAGTTCCAAAGCACCACATCTGCAACGCCAACATGCTTAGAAACGGTGCCGATTACGCCGTCTTCATCAACACAGCTCAGGAGTTCGACGGCAGCGATTCCGGCGCCCGCCCAGACGAGGCCATATCGTGGGGAAAGATCAAAGGCTCTGCCAAGACAGCAAAGGTTCACTGTGATGCCACTATTGCTTTTCCGTTGCTCGTAGCCGGCACTTTTGCAAACAAACTGAACAAATCAATTAAGGCCAGTGGGATTAAAGCTTAAGATGGCGCACATCTTTGCAACCATGAAGTTAATAAAAGCCTATATGGAAGGAAAACGTATGCTGCTGCTGAAAAGTAAAGTGGGTCTGTCAAAGATGAGTTGCTGATTGTAATGTATTGCGATTTTCTCATAACAGGCCGTTAAATTAGAAGTTATAATTATTATGTCAATTTGATGAATGTTTGGAACACTTTAATAGATATTATGAGTTGCTAATCTATCTTCGGTGGGGAAATTTCCTTATATTATCATTATTATGGTTATTTGGTTTTGATGCTCTTTTGTGCTCACTGATGAATAATATTATATCTATGCCTATGCTTTTAATGTGG

Network for GWHGAAEX010504

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01916.16	DS	1	232	7.20E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008612	Biological Process	peptidyl-lysine modification to peptidyl-hypusine

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.640
SRP064423	SRR2545915	Juvenile tuber	5.400
SRP108465	SRR5643513	five period of Gastrodia elata	3.510
	SRR5643514	five period of Gastrodia elata	6.220
	SRR5643515	five period of Gastrodia elata	3.330
	SRR5643524	five period of Gastrodia elata	6.760
	SRR5643525	five period of Gastrodia elata	1.870
	SRR5643528	five period of Gastrodia elata	1.260
	SRR5643658	five period of Gastrodia elata	1.940
	SRR5643659	five period of Gastrodia elata	2.820
	SRR5643660	five period of Gastrodia elata	1.260
	SRR5643661	five period of Gastrodia elata	2.050
	SRR5643662	five period of Gastrodia elata	0.660
	SRR5643663	five period of Gastrodia elata	0.580
	SRR5643664	five period of Gastrodia elata	0.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	244.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	233.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	230.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	213.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	130.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	78.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	391.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	192.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	93.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.980
SRP279888	Gastro	Gastrodia elata tuber	9.62
	Juven	Juvenile tuber	3.15
	Mother_Gastro	Mother tuber of Gastrodia elata	1.48
	Mother_Juven	Mother tuber of Juvenile	1.20