Detail information of GWHGAAEX010506/evm.TU.scaffold_3.161


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|566215624|ref|XP_002325228.2|3.65E-09hypothetical protein POPTR_0018s13200g [Populus trichocarpa]
Swissprottr|Q8S8N6|PLA2A_ARATH3.00E-10Phospholipase A2-alpha (Precursor)
trEMBLtr|A9PB93|A9PB93_POPTR1.00E-09Uncharacterized protein {ECO:0000313|EMBL:EEF03793.2}
TAIRAT2G196901.00E-06phospholipase A2-beta

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000021096306510982201+
Transcript Sequence

Network for GWHGAAEX010506

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01047PLA2G, SPLA2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Arachidonic acid metabolismmap00590
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592
Ras signaling pathwaymap04014
Vascular smooth muscle contractionmap04270
Pancreatic secretionmap04972
Fat digestion and absorptionmap04975

Gene Ontology

GO term OntologyName
GO:0006644Biological Processphospholipid metabolic process
GO:0050482Biological Processarachidonic acid secretion
GO:0004623Molecular Functionphospholipase A2 activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.160
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata0.060
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.070
SRR5643525five period of Gastrodia elata0.080
SRR5643528five period of Gastrodia elata0.260
SRR5643658five period of Gastrodia elata0.260
SRR5643659five period of Gastrodia elata0.070
SRR5643660five period of Gastrodia elata0.080
SRR5643661five period of Gastrodia elata0.080
SRR5643662five period of Gastrodia elata0.230
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.170
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.050
SRR6049665Rhizomagastrodiae_C368-T10_good_10.050
SRP279888GastroGastrodia elata tuber 0.03
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 1.76
Mother_JuvenMother tuber of Juvenile 0.64