Detail information of GWHGAAEX010508/evm.TU.scaffold_3.163
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-142 | FOG: PPR repeat |
| nr | gi|743784610|ref|XP_010921699.1| | 7.63E-174 | PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9SSR6|PPR78_ARATH | 2.00E-142 | Pentatricopeptide repeat-containing protein At1g52640, mitochondrial (Precursor) |
| trEMBL | tr|M0TK16|M0TK16_MUSAM | 1.00E-171 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23300_001} |
| TAIR | AT1G52640 | 7.00E-142 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 11111147 | 11112592 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010508
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 124 | 153 | 0.27 |
| PF01535.19 | PPR | 193 | 218 | 0.0011 |
| PF13041.5 | PPR_2 | 225 | 274 | 1.60E-08 |
| PF01535.19 | PPR | 299 | 328 | 0.0052 |
| PF13041.5 | PPR_2 | 331 | 378 | 1.10E-10 |
| PF12854.6 | PPR_1 | 397 | 430 | 1.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.050 |
| SRR2545915 | Juvenile tuber | 0.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.230 |
| SRR5643514 | five period of Gastrodia elata | 3.590 | |
| SRR5643515 | five period of Gastrodia elata | 4.800 | |
| SRR5643524 | five period of Gastrodia elata | 3.890 | |
| SRR5643525 | five period of Gastrodia elata | 6.160 | |
| SRR5643528 | five period of Gastrodia elata | 3.990 | |
| SRR5643658 | five period of Gastrodia elata | 4.910 | |
| SRR5643659 | five period of Gastrodia elata | 6.180 | |
| SRR5643660 | five period of Gastrodia elata | 6.830 | |
| SRR5643661 | five period of Gastrodia elata | 7.680 | |
| SRR5643662 | five period of Gastrodia elata | 8.150 | |
| SRR5643663 | five period of Gastrodia elata | 7.570 | |
| SRR5643664 | five period of Gastrodia elata | 6.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.01 |
| Juven | Juvenile tuber | 6.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.33 | |
| Mother_Juven | Mother tuber of Juvenile | 4.51 |