Gene detail

Detail information of GWHGAAEX010512/evm.TU.scaffold_3.170

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2325	Predicted transporter/transmembrane protein
nr	gi\|743777534\|ref\|XP_010919203.1\|	PREDICTED: SPX domain-containing membrane protein OsI_17046-like [Elaeis guineensis]
Swissprot	tr\|Q0JAW2\|SPXM2_ORYSJ	SPX domain-containing membrane protein Os04g0573000
trEMBL	tr\|M0S145\|M0S145_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P18870_001}
TAIR	AT4G11810_2	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	11221944	11368874	+

Transcript Sequence
>GWHTAAEX010512 ATGAAGGGTTTCACATATGATTATGAATATTATGACTCAGTGCTGCATTACCGATTTTTCTTTCTTGGGCTAAAGTTTTTGGTTGGACGGAAGCCAATTCTGAAGATCTGCAAGCAAAAAAGGGTGGGCTTTCTGGGAGATTTTTCTGTGTCTGTTCATAATATAAAAGAAAATATGGTAAACTTTGGGAAAAGGCTAATGGTTGACCAGACTCCAGAATGGAAAGGGTACTATATCAACTACAAGTTAATGAAGAAAACAGTTAAACAATATGCTCAACAGGCTCAGCAAGGTGGCGATGATAAAAGGAAAGTTCTGAAAGAGTTCTCAAGAGTGCTAGATGATCAGATTGAAAAGATTGTCCTTTTTCTCCTTGAAGAACAAGGGACACTTGCAAACAGAATTCAAGCACTTGGTGATGAACGTACTGCTCTTTTGGAGCAACCTGATCTATCTCAATTAAGTGAATTACAAATGGCCTATACAGCAGTTGGGCAAGATCTTCTACAGTTGCTTTGGTTTCTTGATATGAATGCTACAGGCATTCGTAAAATATTAAAGAAGTTTGACAAACGCATGGGATATGCATTCACAGACTACTATGTGACAACCAGATCAAATCATCCTTATTCTCAGCTACAGCAGATGTTTAAACATGTGGGTATTGGCGCAGTTGTAGGAGCTTTATCTCGCAATCTTGCAGATGTTCAAGATCGACAAGGCAGCTATCGATCTATATATGATGATCCATCAGATATTTTAAAGGACCCAGTTATAGACTTGATAAATGCTTCTGTGGACAAACTGACGCATTCAACAAACTTCCTCCAATTTTTGGGACAAAGTGCCCTCATCATTCAGGTTGATATTCCCAGTGAAGAAGGAGAGCAGGACGATGATAGAAGATATCATTTCATTTCACTGCTATTAAATCTGGCAAACACTTTCTTATGCATGGTCAATACGTACATTGTTGTGCCCACTGCAGATGATTATTCATTAAGCCTTGGAGCTGCAGCATCAGTCTGCGGTGTAATTATTGGGTCCATGGCTGCTGCACAAGTATTTTCCTCAGTTTATTTTAGTGCTTGGTCCAACAGATCATATTACAAACCGCTAATTTTTAGTAGCATCATGCTTTTATTTGGAAATACGTTGTATGCATTGGCTTATGATTTCAACTCACTGGTAGTTCTTCTAATTGGTCGCCTTTTGTGTGGGTTGGGCTCTGCTAGAGCAATTAATCGAAGATACATCAGTGATTGTGTACCTTCTAAGATTCGTATGAAGGCTTCTGCAGGCTTTGTTAGTGCAAGTGCACTTGGAATGGCCTGTGGTCCTGCACTTGCTGGCTTGCTTCAAATAAAATTTAAAATTTATGCTATGACATTCAATAAAAATACATTACCTGGATGGGTTATGGCCTTTGCTTGGCTTATGTATTTGTTATGGTTGTGGCGCTCATTTAAAGAGCCCAATCATGTTGTGGGAAACCATCAAAATCTTAATACAGGCAATGAAAATGCTGAATTGGAAAATGGAATTCGTCAATCCTTATTGTCTAGATCGAAAGGAAATAAGGATGAGAATGAAGACCAGGAATGTGTTGATGGTGAAGAGGCTTTAAAAGTTCCAGCAAATTCAATTACTTCAGCTTATAGATTATTAACGCCATCTGTAAAGGTTCAATTGTTGATTTATTTCATGCTAAAATATGCTATGGAGATTTTGTTATCCGAATCAAGTCTTGTAACCACTTTATATTTTGGCTGGTCTACAAGTGCTGTGGCCATCTTTTTAGCAATTCTAGGGCTAACAGTCCTTCCAGTAAATGCTTTGGTTGGTAGTTACTTTACAAACACGTTTGAAGACAGGCAAATTTTGTTTGCAGCTGAAATTATGGTGCTAGCAGGTGTTATTTTAAGTTTTCGTTTCACTGCATCATACTCTGTGGTTCAGTATGTAATCTCGGCTATCATTACATTTGTGGCTGCTGAAGTTCTTGAAAGTGTAAACCTATCTCTTTTATCAAAAATAATATCTTCAAGGCTTGCACGCGGAACCTTCAATGGCGGATTGCTGTCAACCGAAGCTGGAACTTTGGCGAGGGTTGTTGCCGACGCCACCATCACATTAGCCAGCTACTTGGGAGAAGACTTGCTTCTTAATGTTACCCTTTTCCCCTCCTTTATAATTTGCTTAATTTCTATTGTTGCTACATTCTTTACTTATAACAATCTTTATTGATTTTCCCTATTTCTTGGAACTAATTTTTTATTTATTGTGCAGTTATCTATAACATTTATTTACTAGAATGCAGTGCGTTCTAGTTTTAGATTTGTATATTTTCTTTTTTGAATTTTCTTTTCATAATCTCCCCTCCTTTTTAAGTTATATTAACTTCTATTGCTTC

Network for GWHGAAEX010512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03105.18	SPX	166	203	7.70E-07
PF07690.15	MFS_1	314	681	8.50E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0005887	Cellular Component	integral component of plasma membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.680
SRP064423	SRR2545915	Juvenile tuber	15.100
SRP108465	SRR5643513	five period of Gastrodia elata	3.000
	SRR5643514	five period of Gastrodia elata	2.930
	SRR5643515	five period of Gastrodia elata	2.440
	SRR5643524	five period of Gastrodia elata	4.090
	SRR5643525	five period of Gastrodia elata	4.760
	SRR5643528	five period of Gastrodia elata	3.580
	SRR5643658	five period of Gastrodia elata	4.050
	SRR5643659	five period of Gastrodia elata	1.280
	SRR5643660	five period of Gastrodia elata	1.740
	SRR5643661	five period of Gastrodia elata	0.930
	SRR5643662	five period of Gastrodia elata	1.420
	SRR5643663	five period of Gastrodia elata	1.200
	SRR5643664	five period of Gastrodia elata	1.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.720
SRP279888	Gastro	Gastrodia elata tuber	4.47
	Juven	Juvenile tuber	1.65
	Mother_Gastro	Mother tuber of Gastrodia elata	7.08
	Mother_Juven	Mother tuber of Juvenile	4.84