Gene detail

Detail information of GWHGAAEX010515/evm.TU.scaffold_3.179

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0955	1.00E-97	PHD finger protein BR140/LIN-49
nr	gi\|672177977\|ref\|XP_008809103.1\|	4.88E-156	PREDICTED: uncharacterized protein LOC103720915 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LS28\|GTE12_ARATH	2.00E-10	Transcription factor GTE12
trEMBL	tr\|W9SX21\|W9SX21_9ROSA	1.00E-117	Bromodomain and PHD finger-containing protein 3 {ECO:0000313\|EMBL:EXC31535.1}
TAIR	AT1G20670	1.00E-97	DNA-binding bromodomain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	11991303	12011023	+

Transcript Sequence
>GWHTAAEX010515 GTTAAAAAAATGAGCATCATAGCTGTCATAAGAAAATAACTCAGGAGGGCCCACCAATTAGTTGGGGTTGGCTTCTTCGGATGCCAAAGTATAATCTATAAACCAGAAAAGTGCTCCGCTGGGCATTTACACACAAGTCACAACTAAACTTGACTAGAAAGCCCACAGCCCATCCGGTTTGCCACGTCGGCACTCCCGCGCTGTCGAACCTCTCCAATAAATATCTCAGCGCCCGACACGTGCGCCGGGGCTCCAAGCCTCCGGCTCGCCAAATATTTTATTTTTCAAAAAAATAGCGAAATTTATCCCTGTGTCCAGAGAGAGAGAGAGAGAAAGAAGAGGGCGGCGGGGTCCGAAATGGGAAAGACCGTGGAGACCAAGAGGAAGAAGAAGGGCCGTCCCTCTCTCTTGGATCTCCAGAAGCGTAGCCTCAGACTGCAGCAGCAACAGAAAAAGAGAAGCCCTAACTCTAATGCTAATCCAAATCCATATCACCGGTTCCCCAACACTGGCGCTTGCTCAGGTCCCCGGAGTACCCGCCGGAATCCGATCATTGAGCCGATGCCAGAGGTGCGTGATGATGGAGAAGACGATGACGAAACAATTGGGAAGCAGAGGGAGAAGGAGCTTAAGCTCCTCCTCCGAATCCACGACCTTTCAGAAAATTCGCCGCGATATTCGGAGCCATCGGGCTCCGAATCGGAAGGAGAGGGCTCTGCTTTGCGCAGGAAGATGAAGATCCAGCCTTTTGGTGGTGATGGCGACCGCTCAAAGGTTGTCTGGCACAGCTCCTTGAAAACGACGGGTTTACTTCGAGCGGAGACACCAAATTCGGGGCCCACGACACCTTTGCCAGACAAAAAGTTGTTGTTGTTCATCCTTAATATGCTGCAGAAAAAAGACACGTATGGAGTCTTCTCAGAACCGGTGGATCATGAAGAGCTCCCAGATTATCGTGAAGTCATTGAGCATCCTATGGATTTCCGCACAGTACGGGAGAAGCTCTTACGTGGAGCCTACAAATATTTGGAACACTTCGAGAAGGATGTGTTCTTAATCAGTACAAATGCTATGCGATACAATTCATCGGACACTGTATACTACCGGCAGGCACGATCTATTCAAGAGCTCGCGAAGAAAAATTTTGAAAACCTGAGGCAGGAAAGCGACGAAGAGCTTGAAACGAAGACAGTTGCAAGAAGAGGTCGACCGCCAGGCAAGAGCAGGCCCGCCGGCCCACGTCCTTTTGAGCTTGCTGCCTCACGCTTGTCCTCAGACCTGACCCCAGCCAATGCTAGCAGCGGTATCAATTTGCCCAACCAAACTCATCCTTTGTCTAAGAAAGCCTCAGCAACTGATAAGCCTCGATTGGCTGATGTTTCTGGAAAGGTTTCTTATGGCCTCCGCAGCTCCGATTCGTCCGGCTGGTTAAACAAGAACAAAGTCGATGCAATCGAGGAATTCCCAGGTTCTGCCAAGGGGATTTCGGCAAGATTTTCCGGCAAAATAGCTCCAGTTACGGAGGAGAGCCGGAGGAACACTTACAGTCAGTTCCAGCCCTTCGGTTATTGGTGCGAGTCACCGATCTGGTCTCTGTTTGATTGCGAGAAGCAGCAGCTAGCTGCGGTGGGGGTTCCTATGGAGCACGCATACGCGAGGAGCTTAGCCCGATTTTCTGCGCATCTGGGATTGATCGGATGGGCCATTGCTTCCAAGAGAATTGAAAGGGCATTGCCTCCAGGAACTAAGTTCGGCCGAGGATGGGTTGGGGACGCCGAGGCGCCCCCGCCTCAAAATCCATCCTGCGCCACGGATCTAAGACGAAGCAATGGACCTTTGTGGAGGGCCGAGTCTTCTTCATGCAGCGGCATGTGTCCGGAGGCTTCTCCTCCTTGCCACAGCAATGATGATGGGCTCATCATGTCCAATACTGGAGCTTTGAACAAACGAATGCAGCCGGCAGCCAATGGCTTTACTGGATCTACCATGTTTATTAAACCCCCATCTTTTCAAGCAGGCAGCATAAAGAAGCCCGTGAGACCGCCCACAACTAATGTGCCCGAGCTTCCTGTGTCCCGTGCCTGCGAAAATGACGCGCCCCAAAGAAACAACACCTCAACTTGGCCACATTCGAGCCGCTTCAACTCTGAAATGGCAACAAATTGTAATACTCCTATTAATGATTCGCAGTGGCAACCATCTTTGGTCCAGGCTAAGTTTGAATCCATTCCGCCTGATCTCAATATCACCGTTGATTCCCAGCAACCTGATTTAGCATTGCAGCTCTAATTGCATACATACATATATATTTATATTTATATTTATATATAGATGAAGGATGCAGCACTCAAGCGTTGTACAGATTAAATTAATGTATTACGATTACAGTTGAATTGATGGCATTGATTCATCTCATATTTGTGACAATTCATTTCACCACGCAGCTGAGGGAAGTATTTGATCTAGCGTTATCATAGGTCTTGCTTACTAGCTGCTATTTTTTCTTTTTCTTGCAATGAAATGATAAATTCTGTGTGGAGTTCTTTCTGTATATTATGTAGAGAATCTATATTCCTCCTACGTTCTAGAGTCTGAACTGCGAAAGTAAAATCCA

Network for GWHGAAEX010515

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.24	Bromodomain	174	253	6.00E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.800
SRP064423	SRR2545915	Juvenile tuber	26.260
SRP108465	SRR5643513	five period of Gastrodia elata	11.530
	SRR5643514	five period of Gastrodia elata	8.290
	SRR5643515	five period of Gastrodia elata	8.760
	SRR5643524	five period of Gastrodia elata	8.400
	SRR5643525	five period of Gastrodia elata	25.250
	SRR5643528	five period of Gastrodia elata	18.830
	SRR5643658	five period of Gastrodia elata	27.320
	SRR5643659	five period of Gastrodia elata	10.630
	SRR5643660	five period of Gastrodia elata	11.840
	SRR5643661	five period of Gastrodia elata	9.490
	SRR5643662	five period of Gastrodia elata	8.320
	SRR5643663	five period of Gastrodia elata	8.170
	SRR5643664	five period of Gastrodia elata	11.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.240
SRP279888	Gastro	Gastrodia elata tuber	14.51
	Juven	Juvenile tuber	11.58
	Mother_Gastro	Mother tuber of Gastrodia elata	18.75
	Mother_Juven	Mother tuber of Juvenile	24.54