Detail information of GWHGAAEX010518/evm.TU.scaffold_3.185
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209885088|ref|YP_002288945.1| | 2.00E-45 | UDP pyrophosphate synthase [Oligotropha carboxidovorans OM5] |
| KOG | KOG1602 | 1.00E-64 | Cis-prenyltransferase |
| nr | gi|117626790|gb|ABK51403.1| | 2.03E-78 | LLA-66 [Lilium longiflorum] |
| Swissprot | tr|Q8S2T1|DDPS6_ARATH | 2.00E-66 | Dehydrodolichyl diphosphate synthase 6 |
| trEMBL | tr|B2BA86|B2BA86_LILLO | 8.00E-79 | LLA-66 {ECO:0000313|EMBL:ABK51403.1} |
| TAIR | AT2G17570 | 1.00E-64 | Undecaprenyl pyrophosphate synthetase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 12233290 | 12234836 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010518
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01255.18 | Prenyltransf | 43 | 254 | 1.20E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11778 | DHDDS, RER2, SRT1 | Biosynthesis of secondary metabolites | map01110 |
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.790 |
| SRR2545915 | Juvenile tuber | 1.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.170 |
| SRR5643514 | five period of Gastrodia elata | 5.960 | |
| SRR5643515 | five period of Gastrodia elata | 1.380 | |
| SRR5643524 | five period of Gastrodia elata | 3.680 | |
| SRR5643525 | five period of Gastrodia elata | 12.060 | |
| SRR5643528 | five period of Gastrodia elata | 2.350 | |
| SRR5643658 | five period of Gastrodia elata | 5.780 | |
| SRR5643659 | five period of Gastrodia elata | 4.970 | |
| SRR5643660 | five period of Gastrodia elata | 3.530 | |
| SRR5643661 | five period of Gastrodia elata | 3.600 | |
| SRR5643662 | five period of Gastrodia elata | 8.800 | |
| SRR5643663 | five period of Gastrodia elata | 6.850 | |
| SRR5643664 | five period of Gastrodia elata | 6.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.52 |
| Juven | Juvenile tuber | 13.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.62 | |
| Mother_Juven | Mother tuber of Juvenile | 1.81 |