Detail information of GWHGAAEX010524/evm.TU.scaffold_3.195
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256829174|ref|YP_003157902.1| | 3.00E-42 | poly(A) polymerase [Desulfomicrobium baculatum DSM 4028] |
| KOG | KOG2159 | 6.00E-103 | tRNA nucleotidyltransferase/poly(A) polymerase |
| nr | gi|672131593|ref|XP_008789358.1| | 0 | PREDICTED: uncharacterized protein LOC103706875 [Phoenix dactylifera] |
| trEMBL | tr|B9S6T6|B9S6T6_RICCO | 9.00E-146 | Poly(A) polymerase, putative {ECO:0000313|EMBL:EEF40692.1} |
| TAIR | AT1G28090 | 6.00E-103 | Polynucleotide adenylyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 12736749 | 12793881 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010524
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01743.19 | PolyA_pol | 92 | 151 | 3.10E-11 |
| PF01743.19 | PolyA_pol | 204 | 248 | 2.40E-08 |
| PF12627.6 | PolyA_pol_RNAbd | 275 | 337 | 3.00E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.410 |
| SRR2545915 | Juvenile tuber | 14.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.500 |
| SRR5643514 | five period of Gastrodia elata | 9.370 | |
| SRR5643515 | five period of Gastrodia elata | 7.310 | |
| SRR5643524 | five period of Gastrodia elata | 8.960 | |
| SRR5643525 | five period of Gastrodia elata | 7.230 | |
| SRR5643528 | five period of Gastrodia elata | 6.000 | |
| SRR5643658 | five period of Gastrodia elata | 6.830 | |
| SRR5643659 | five period of Gastrodia elata | 15.140 | |
| SRR5643660 | five period of Gastrodia elata | 15.740 | |
| SRR5643661 | five period of Gastrodia elata | 7.150 | |
| SRR5643662 | five period of Gastrodia elata | 25.240 | |
| SRR5643663 | five period of Gastrodia elata | 17.710 | |
| SRR5643664 | five period of Gastrodia elata | 16.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.83 |
| Juven | Juvenile tuber | 14.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.08 | |
| Mother_Juven | Mother tuber of Juvenile | 17.18 |