Gene detail

Detail information of GWHGAAEX010525/evm.TU.scaffold_3.197

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743775692\|ref\|XP_010918236.1\|	0	PREDICTED: protein GRIP isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8S2T0\|GRIP_ARATH	0	Protein GRIP
trEMBL	tr\|A0A067LHT5\|A0A067LHT5_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP43749.1}
TAIR	AT5G66030	3.00E-173	Golgi-localized GRIP domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	12875252	12961121	-

Transcript Sequence
>GWHTAAEX010525 ATTGAACATCTCACGCCTAATTCTTATTAATATTATTAATTTTACCGTAAAACTACCTAAAACGACTCCGATTTCCTTCGATTTTCTTTCGCACCGTGACCCCCCGAAGCGGCGAAGCTTCACGTCTTCTGCCAGTAATCCCGACGTCTTTTCTTCTTCTGCTAGCAACTCCAGCACTGGTGCGAAACCCCTTCTCTTCTTCAACCCTCCAATCGACGTTGCTCGCAACTGAGTGCCGTCGCTCTCGCAGATCTCTCTCATCGCTACCGGTCTTGCAGATATTTCCGTCTCCGTCGTCCCATTGTTTCAGAAGTCCATCTTTTTACTGCGAGTCAAACGTGATGACTAGTGAAAATGCTGCCATGCCAAATTATGAGAGATTTGATGGATCATTACATGGTCTAAGGGAAGATATTTCTGCATTGAACCAAATGGTTAATGGGAGCCAAGAGTTGGATTATTCTTCTGTTAATTTTGAGAAGCGAAAAGATGTTCATCCAGGATATGCAAACCCTGATGAAACATATGACCAACTAACAAGGACAGTTATGGAGCTGAGTCTCCAAAATGATTATTTGATTACTCAGTTAAAATATACAAATTCTCAGGCTTTTGGCTCTGTTGAGGTTGCTAAGTCAGATGATGGAACCAGAGATGAAAATGCTGCTGAAATAATTAGATGTCTTCAAGAGAAGATAAACAGCTTGAACAAGATAATTCAGGACCACAAAGAAACACAAAAGGCAGCAGAAAATGCTTTGGAACATCTTAGGTTGGAATGTTCTGAGGCTGATGGAAAAGTTCAGACTCTTTCATTAAAACTTATCGAAGCGCAACAGCTAATGGAACGTGAAATAAAAGAGCGCGATGACAAGCATGTTGAACTAGATTCCAAATTTGGAAGGCTCCACAAACGTGCAAAACAACGAATTCAAGAACTTCAAAAGGAAAAGGATGACCTAGAAACTCGTTTCCATGATGTCAGTGTAACGGCTGAACAAGCATCATCGCAGCTTATTGCAGCACAACAAGAAGTGGAACGGACTCGACAGCAAGCTAATGAGGCATTGCGTTCAATGGATGCTGAGAGGCAACAATTACGTGCAACAAATAATAAACTTAGAGATAATGTTGATGAATTGCTTCGCTCATTAGAAGTTAAGGAAAGTTCTTTAGAGGGACTGCAGCAATTTCTTTTCCAGAAAGAGCAGGCTCTTGCAGAAACTCAGAGAGCGTTGCAAGCCTTAGAAGAAAAACAGCAATTGTCAATCACGGATCTTTCTACTAAACACCAGAAGCAAGTAGGAAGCTTGGAAGCACAGCTAGCTGATGCTTTATCTGAAAGAGGCAAAGCTACCGAAGCAGTAGCTTCCCTACAAATGATTCTTGCTGAGAAGGATTCAAAAATTGCGGAGATGGAAGCTGGTTTATCTGGTGAGGTTGCACGGTTTGGAGCTGCATTGGAGGAAGCTAAAGGGGATCTTATTCACCTCAAAGATATGCATAAAAAGGAAAGCTTAGATCTGGAAACTGAATGTCAAACTTTGAGAGTTAAGTTGGAGGCATCTGAGAGCACCTATCTGCGGACTGAGATAGAGTCTGCTAAAACAATAAGTCAGCTGGAATTTGATTTATCTATGCAGAAACAATTGCTGATTGCTAGAGAAGCTGAGCTAATGTCTGTCAAAGATGAGATCAACCGGTTAGAAAAGGAATTTTCTGCATATAAAGTGCGTGCTCATGCTCTTCTTCAGAAGAAGGATAATGAACTAGCTTCAGCTCGGAATCCAGAGCAATTGAAAGCTCTGGAGGAAGCAATCAAAGAAGCTAAAATGGAATTAGCAACAACAGTAGAACAAAGGGACAGTGCCATTAAAGAGCTTCAAGATGCATTGGACAGTCATAGTAAAGAAGTTGCTGCAAGAGATGCAAGTCTTATGGTTGCTGAAAACCAGATAAGGATAATTACTATGAAGCTTAATTCTGCTGTGGCACAACATCAAGCAGAGAGAGAAGCATGGCAAAAGAACCTTGAGGATGTAGAAGACAGCTGGAGAATAAGATATGCTGCTCAAGAAGTTGAGAAATCTGATCACACTAAGAGTGAATTGTTGAAGGAAATGGAAGAGTTTAAGCTGCACTATAATAAACTCAAGGATGAGCATGACACTTTCCGTGATATTGCTGAAAGAACAATAGAAAGGAAAGATGAGGAGATTATAAAACTCAAAGATGATAACAAACATCTTTCTCTTGAATTGAGTTCAAGACCGGAAGTTGATCAAAATGTTGATTCAGATTCAGCTTCTCTAAAGCAGGATGCACAAATTTTAAGCGTAGCTGTGGCGGAACAACAAATTCTGGTTCTTGCTAGGCAACAAGCTCAGAGGGAAGAAGAACTCGCACAGTCACAAAGACACATCTTGGCTCTTCAGGAAGAGATTGAAGAGTTGGAACACGAAAATCGTTTGCACAGTCAGCAGGAAGCAATGTTGAAGGAGGAGTTTCGTAATGTCGAGAGATCAAACAAACGCGAAGGAGTTGATATGACTTATCTTAAAAACGTCATACTAAAACTTCTTGAGACAGGTGAAGTGGAAGCATTGCTGCCTGTCATTGGAATGCTTCTGCAGTTCAGTCCTGATGAGATAAGAAAGTGCCAGCAAGTATATCGATTGAATGCTGCTTCGAGCCCGGCAGTTTCTGTTGAACCCGCACCGCCTCGATCGCTTTTTTCGATATTCTCTTTTTCAGGCTGACAGATTTGGCTTATTATTTTTTATTCAGAACTCTCATCAGCTTATTAGTGCAGTGGCATGATTATGTTGCTGCAGTTGGGTTATAAATTTGTAAACCAAAAGTTATATTATACTGATATATATATAGTCTGTTGAAAGGTTTTCTTTAACTTTTTTTGGTCAACACTGAGTCAATAAAATTTGTACAGTGCAGTGTGTTCATGTTCATTTGAGATGGGGAAATAAATTAAGCTCTTGTAATTTTTGAATCTATAATCTTTTCCAG

Network for GWHGAAEX010525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01465.19	GRIP	733	772	2.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007023	Biological Process	post-chaperonin tubulin folding pathway
GO:0007021	Biological Process	tubulin complex assembly
GO:0048487	Molecular Function	beta-tubulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.330
SRP064423	SRR2545915	Juvenile tuber	23.240
SRP108465	SRR5643513	five period of Gastrodia elata	10.070
	SRR5643514	five period of Gastrodia elata	10.760
	SRR5643515	five period of Gastrodia elata	10.330
	SRR5643524	five period of Gastrodia elata	10.290
	SRR5643525	five period of Gastrodia elata	9.570
	SRR5643528	five period of Gastrodia elata	8.490
	SRR5643658	five period of Gastrodia elata	9.840
	SRR5643659	five period of Gastrodia elata	13.790
	SRR5643660	five period of Gastrodia elata	13.200
	SRR5643661	five period of Gastrodia elata	12.440
	SRR5643662	five period of Gastrodia elata	13.730
	SRR5643663	five period of Gastrodia elata	13.530
	SRR5643664	five period of Gastrodia elata	13.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.990
SRP279888	Gastro	Gastrodia elata tuber	14.74
	Juven	Juvenile tuber	12.32
	Mother_Gastro	Mother tuber of Gastrodia elata	13.35
	Mother_Juven	Mother tuber of Juvenile	15.79