Gene detail

Detail information of GWHGAAEX010526/evm.TU.scaffold_3.200

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|89897300\|ref\|YP_520787.1\|	4.00E-26	hypothetical protein DSY4554 [Desulfitobacterium hafniense Y51]
KOG	KOG1075	0	FOG: Reverse transcriptase
nr	gi\|672125602\|ref\|XP_008786221.1\|	0	PREDICTED: uncharacterized mitochondrial protein ymf11 [Phoenix dactylifera]
Swissprot	tr\|P38456\|YMF11_MARPO	3.00E-39	Uncharacterized mitochondrial protein ymf11
trEMBL	tr\|A0A022Q230\|A0A022Q230_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU20560.1}
TAIR	AT5G46920	0	Intron maturase, type II family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	13090155	13092510	+

Transcript Sequence
>GWHTAAEX010526 AAAAAATGTATGATAACTTCGATCCTTAGTCTAGGGTGTTTCTACTCGATGCTTCGCAGCCTCTCCTTCCTCCGCCGTCTCTCCTCGTCTTCTGCCTCTGCTTCTCTCCTCCGATACCTCTCCTCTATAGCTCGCCCCATTACCCATCAGCAACGGCGCCGCTTGCCTCCTTCTTCCCCTCCAGCCTCCCTTTCTCCTCTCCTCAAAGAAGATGCCATTTCCACCCTCTCTTCTCTTTGGATCTCCAGCTTCCGCAACCCCTCGTCCACAGTCACCTCTCTCTCCGATAACCTCTCCCGCCCTGAGCTTTGGATCCTCTCCTACCAAAAGGTCTATGCTGACGAGACCGGCTCCTACCTCCCCAAATCCTCTATCTCCCATTCCGCCATTGAAGACCTCCTCGCCCTCCGCAACGCCGTTCTTGACTGCCGTTTCCGCTGGGGTGCTCGCCTCGAGTTCTTCATTCGCTCTCCTCGCGACAAGACCGATCTCTCCTCGCTCTCCAAGCGCAAGATCCGCGCGCTCCTCACCAACCCTCAGCCTTCCCCTTTCCAGGACCGAATCGTTCAGGAAGTGCTCCTTTATCTCATCGAACCTGTTTTCGAATCGAGATTCTCTCAGAAATCATACGCATTTCGCCCTGGCCGCACTGCCCACACGGTCATACGCACCATCCGTCGCAGCTTTGCCGGGTATCTGTGGTATATGAAGGGTGATCTGAGCACCATTCTGGATGGCGTCAAGCCTGGGCTTGTTCTCAGCGCTCTCATCCGGGAAATCAGGGATCGGAAGATCGTAGATTTGATCAAGTCTGCTCTTGTCACTCCCGTTGTTACCCGCAATCCGGCGGATGAGGCAGTTAAAAAGAAGAAGACGAAACGCAAGTATCAGAAAAAGAGGGTTTTGGCAGAGGATGAGCCGAAGCCTGACCCTTACTGGCTCCAGACTTTCTTCGGATTTGCACCGGCAGAGGCGGACAAGTATCCCAATTGGGGGCATTGCGGGGCTCTCAGCCCCTTGCTTGCTAATATTTGTCTTGATGAATTGGACAAGTGGATGGAAGAAAAAATCACAGAGTTTTATAAGCCTTCTAAATCTGATGTTATTTGGACAGGGGAGGAAGGAAACCTTGAGCAGGGGAACACCTCGTGGCCTGAGTTTGTTCCCACTAGTGGTCCGGACAAGACAAGGAAGATGGACTATGTTAGGTTTGGAGGACATATTTTAGTTGGCCTAAGAGGCCCTAGGGCAGATGCTGCTGAGTTGAGAAAGCAGCTTATTCAGTTTTGTGATCTGAGGTATGAATTGAAGTTGGATAGCGAGAGTCTTCCAATCGAACACATTACTAAGGGGATCATGTTTCTTGACCATGTGCTATGCCGCCGGGTTGTTTATCCGACTCTGCGATACACTGCAACTGGAGGCAAGATCATTAGTGAGAAGGGTGTGGGCACATTGCTCTCGGTGACCGCAAGTTTGAAGCAATGCATTAAGCAATTTAGGAAATTGGGATTCTTGAAGGGTGATAGGGACCCGGACCCCCAACCTTGTTTTCGAATGTTTCATGCTACTCAGGCTCACACAAATGCACAAATGAACAAGTTCTTATCAACCATTGTGGAGTGGTATCGGTATGCCGATAACCGCAAAAAAATTGTCAACTTTTGTTCTTATATTATTAGGGGATCCTTGGCTAAGCTTTATGCTGCTAAATACAAGCTTCGGTCTAGAGCTAAAGTTTATAAGATTGGAGCGAGGAATCTTCAGCGGCCATTGAAGGATAAGAAGGGGCAGTCCCCAGAGTACAATGAGTTGATGAGGATGGGTCTTGTTGATTCTATTGAAGGACTTCAATATACTAGGATGTCCCTTGTACCAGAGGCAGACTACACACCGCTTTTAAGTGGATGGAAGCCAGATCATGAGAAGGTTTTATTAGAATATATCAAGCTTGAGGACCAAACAACTCTTGATGTTCAAAAGAAATGCATTAAGGAGGAGGGTCTCATAACACCTCAGGATTATATATCAATGCTTGTTTGGAATTATAAGAAAAATGCTGTAATGCTGCCTCTAGTGGGAGAAAATGGTGCCCAACAGGCTAAGGAAGAGCTATTGGGCTTACCAGATCATTCTGGAAATAAGGTTGGTGATGATAAAGCTTGCGGACGTATGCTGCAGGATGCTCTTATGTGAAAAACACTTGTTTAATTGTTAGAGTCAAGCTACCAGGAATAGCTCTATTTCAAGTTAGTTTGAAAGTAATGAAAGCCAACTGAATGTATGTGCCTATGTAATGTATCTAAGATGCAATATTAAATTACATGCCATAGGCAAAGTTTTGCATATAATCTCT

Network for GWHGAAEX010526

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01348.20	Intron_maturas2	486	591	3.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.150
SRP064423	SRR2545915	Juvenile tuber	6.230
SRP108465	SRR5643513	five period of Gastrodia elata	9.650
	SRR5643514	five period of Gastrodia elata	10.010
	SRR5643515	five period of Gastrodia elata	8.510
	SRR5643524	five period of Gastrodia elata	9.790
	SRR5643525	five period of Gastrodia elata	5.420
	SRR5643528	five period of Gastrodia elata	6.420
	SRR5643658	five period of Gastrodia elata	4.160
	SRR5643659	five period of Gastrodia elata	17.180
	SRR5643660	five period of Gastrodia elata	16.920
	SRR5643661	five period of Gastrodia elata	19.160
	SRR5643662	five period of Gastrodia elata	17.810
	SRR5643663	five period of Gastrodia elata	16.580
	SRR5643664	five period of Gastrodia elata	12.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.610
SRP279888	Gastro	Gastrodia elata tuber	10.20
	Juven	Juvenile tuber	11.88
	Mother_Gastro	Mother tuber of Gastrodia elata	4.39
	Mother_Juven	Mother tuber of Juvenile	6.20