Gene detail

Detail information of GWHGAAEX010537/evm.TU.scaffold_3.211

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1634	5.00E-118	Predicted transcription factor DATF1, contains PHD and TFS2M domains
nr	gi\|743769464\|ref\|XP_010915021.1\|	0	PREDICTED: uncharacterized protein LOC105040260 [Elaeis guineensis]
trEMBL	tr\|M0TWV8\|M0TWV8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P02510_001}
TAIR	AT5G11430	5.00E-118	SPOC domain / Transcription elongation factor S-II protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	13592280	13603314	+

Transcript Sequence
>GWHTAAEX010537 ATGGTACATCCGCCCAAAAGTCAAGCATGTGATCCTGTTAATCTTAGTTTGCAAAAACCCCAACGAACTAGCAAGTTGACATCTGGAGTGGATTCATTGCAAAGGATTCGTAATCAAGCCTCTGTTAATGTTGGGGCACCGTTAACATCTTACAGACAGAAATCACAGATGGAGTCCTTGCAAAAACTTCAAACAGCATTTCCTATGGTTGCAGGGTCACATCAGTTATTGCCGATAAACAAACGTCCTGGACAGATTGAGCTACCGGTGAAAGTTCAGGTGAACTTTGAACTGGTTAGGTCAAAACTGAGAGAATCACTTGCTTATGCATTGGATTCGGGTTCAAAAGAGCAAAGTAAACCAAGGTTTCTTGAAAAAATATCTGCAAGTGAAGAAAAATGCTTGTTAGAGAAGGCAGAAGATTCATCTCTGCAAAATGAAATTCATCTATCTGCTACAGATGGTTCTGTCTGTGAAAGTTTTCCCAAGTATTTGAATTCCAACAAACAAGTTGAGAATTTTGATGGGGAAAAGGAACTTCCTAGTGAGGCCGTCTTAATTGGAAATTTGGATGATAAAGAAGCAGTAGACAGCGTTTGCAATGTGCAAGAAGCCAATGAAAGACATGATACTGTGATTGATGCCGTTCCATTTAGGAGTTGTCCCGTTATGGAAGATGAGCTATTGCAAGGGCATGGTCTCATCTGGGCATCTGATTTTGATTCTGTGAATGCAGACTCTCCGAACACTGCTTTAAAAAGGCTTAAGTTGATGGATGTGGAAGAAAACAGAGACTCCATTGGAACATCACTTCATACTTCGGAGCATTTGGCTTTTCTAATTGAAGAAGAATTATTTAAATTATTTGGTGGTGTTAACAAGAAATACAAGGAGAGAGGTAGATCTCTTTTATTTAATCTGAAGGACCCTAGTAACCCAGAGTTGAGAGAGCGAGTCTTATCTGGTGAAGTATCTCCTGAGCGGCTCTGTTCCATGACTGCTGAGGAACTTGCTTCAGAGGAGCTTTCGCAGTGGAGGCAAGCTAAAGCAGAAGAATTTGCACAGATGGTTGTGTTACCTGACGTGAATATTGATATAAGGCGTTTAGTGAGAAAGACTCATAAAGGAGAGTTCCAAGTAGAAGTTGAGCAGTATGATGGTGCTGTTTCAGAGGTTGGGCTTGGATCAGATGCTCTTTCTAGGATGTCAGCAGAATACAATAATGCAGAAAAACATCAACCTAGATCAAATGATAAAGGACTGATTGTTTCAAGAGTTAGTGACTCGATGATAACTGATGACTTGCTGCATGGTGGTAAGTATGATTCAGATGGGAGAAACTCTTCAAATATTTTAAATCACAAATTGCTCGAGAAGGCTGATGATGTGCAGAATTTTATGGTATCAGAATCGAAAGATACAGAGCTTCTTCCTTCTGTTGTGTCTCAGAATGAGTTCATGCAGGAGCCTGATTCTGAATCTCATTTTAAGAGCCTGACAGATAATAATTTGCAAGAAAACCTTAGAACCGTTGATAGGAACTTAGATAAAGTCGAGTATGAGAGCATTCATGCTTATGGAAGCTCAGAGCATAAGGCTGTTTGCACTCCGGATATTTCAGCTGGTAAGTTGATTTCAGGAAACAACTTGGATTCCCAGTTACACTCTGGTGGTGATAGTCACACCGAACATGCGAATGAAAGAACACTCTGGGAGGGCTTTCTTCAACTTAATGTTTCAGCTCTGTCAAATGTTGTCAGCTTCTACTTGAGTGGTGAGAGAACATCGATGCTAGAATGGCCCAGCTTGCTTGAGGTGAAAGGAAGAGTTAGATTAGATGCATTTGAGAAGTTCCTGCAAGAGCTTCCTCTCTCTCGAAGCAGATCAATTATGCTAGCGGAGTTCGGCTGGAAGGAGGGCTCTACGGATAGCGGGCGAGCACATCTCTCAGAGGCCATCCACTCATATGTAACGGATGAGCGGCTGGGATTTGCTGAGCCTGCTCCAGGAGTTGAGCTTTACCTCTGCCCTCCCCACCCCAACATCACCGGCTTGCCCTCCTTCAAGGAACTCCTCGAGAAAATCGGCCGCGCCGTCGAGGGCCTCATCGGCATCATCGTTTGGCGGCGCCCCCATTCGATCGCATCGCCCAAGCCTTCGTCCCACCACCAAAAGCATGGCGCATCGAAGAAGCTTTCCCACTCCGGCTCGAAAAGGCGCCATGAAAGCTCCAAAGACCATCATTCCAATTCGACGCCTCGCCGGAATCTGATGCCTATGCCCGCCGATGAAGACGACGTGCCACCCGGCTTCGGCCCACCTATTTACAGGGATGACGACGATCTCCCAGAGTTCGATTATTCACACGGCAGCTGCCCGCCCGGGATGGCCCGCCCTCCCGAGCGCGCCAGGGAACTCATCCAAAAGTATGGTCACTGCGAGGGCAGCGGCATTCCTGTCCACCCATGGAATGATGATGAGGATTATGCTCGTGATGATGATGACGATATTCCTGAATGGAATCCGAATCAAAATATAAAACAGGCGCCGCCATCCGTTCTCGTGCTTCCGCCGCAGCAGCACCAGCTGCACCAGCAGTACCAGCAACAGCAACAACAACAACAACAACAACAACAATACCAGCAACAACAACAGCAGCAGTATCAGCAACAACAACAGCAGCAGCACCAGCAGTACCAGCAACAGCAGCACCAGCACCAGCAGCAACAAAATGTCCAGCAATTTGCGATGAACCAGAACGTGATGGTGCCTTCTATGATGCCGTTTATGCAGGCGCCGCTGCCTCCACAGGCTCTCATGCAACAGCAGGTTCATCCGATGCCCAACGTTATGCAGCAGTGGTGGCCGGCGGATCCCGGTATGGCCGGCGGATATGTGCATTCTGGAATGCCCCAAGGCTTTTTCATGGGTTCTTGGAGACCTGATCATTCTGGTTCAATGTAAAGTTTGTACTGTAAGCAAGAACAATAATTCTGTAATGGGTTTTAATTGTCTTTAATTTTGTGTTTTGATTGTGATAACCGAGGGAAATTTTATGTAAAAAAATCTGTTCATGTGCATTGTCTGTGTTCGCAGTGAATGGATGGCAGCTTGTTTTATAGTGACATGCATGCCTTTAATAATTTTTTGATGTGCCCTTAGTTTATAGAATCATGCGGTTTTTGTTGCTTTATTGGCTTTGAATGAG

Network for GWHGAAEX010537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07500.13	TFIIS_M	272	352	1.20E-29
PF07744.12	SPOC	562	707	1.00E-14

Protein Sequence

>GWHPAAEX010537
MVHPPKSQACDPVNLSLQKPQRTSKLTSGVDSLQRIRNQASVNVGAPLTSYRQKSQMESLQKLQTAFPMVAGSHQLLPINKRPGQIELPVKVQVNFELVRSKLRESLAYALDSGSKEQSKPRFLEKISASEEKCLLEKAEDSSLQNEIHLSATDGSVCESFPKYLNSNKQVENFDGEKELPSEAVLIGNLDDKEAVDSVCNVQEANERHDTVIDAVPFRSCPVMEDELLQGHGLIWASDFDSVNADSPNTALKRLKLMDVEENRDSIGTSLHTSEHLAFLIEEELFKLFGGVNKKYKERGRSLLFNLKDPSNPELRERVLSGEVSPERLCSMTAEELASEELSQWRQAKAEEFAQMVVLPDVNIDIRRLVRKTHKGEFQVEVEQYDGAVSEVGLGSDALSRMSAEYNNAEKHQPRSNDKGLIVSRVSDSMITDDLLHGGKYDSDGRNSSNILNHKLLEKADDVQNFMVSESKDTELLPSVVSQNEFMQEPDSESHFKSLTDNNLQENLRTVDRNLDKVEYESIHAYGSSEHKAVCTPDISAGKLISGNNLDSQLHSGGDSHTEHANERTLWEGFLQLNVSALSNVVSFYLSGERTSMLEWPSLLEVKGRVRLDAFEKFLQELPLSRSRSIMLAEFGWKEGSTDSGRAHLSEAIHSYVTDERLGFAEPAPGVELYLCPPHPNITGLPSFKELLEKIGRAVEGLIGIIVWRRPHSIASPKPSSHHQKHGASKKLSHSGSKRRHESSKDHHSNSTPRRNLMPMPADEDDVPPGFGPPIYRDDDDLPEFDYSHGSCPPGMARPPERARELIQKYGHCEGSGIPVHPWNDDEDYARDDDDDIPEWNPNQNIKQAPPSVLVLPPQQHQLHQQYQQQQQQQQQQQQYQQQQQQQYQQQQQQQHQQYQQQQHQHQQQQNVQQFAMNQNVMVPSMMPFMQAPLPPQALMQQQVHPMPNVMQQWWPADPGMAGGYVHSGMPQGFFMGSWRPDHSGSM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.220
SRP064423	SRR2545915	Juvenile tuber	39.690
SRP108465	SRR5643513	five period of Gastrodia elata	53.120
	SRR5643514	five period of Gastrodia elata	55.020
	SRR5643515	five period of Gastrodia elata	47.570
	SRR5643524	five period of Gastrodia elata	52.650
	SRR5643525	five period of Gastrodia elata	50.930
	SRR5643528	five period of Gastrodia elata	53.520
	SRR5643658	five period of Gastrodia elata	59.560
	SRR5643659	five period of Gastrodia elata	37.340
	SRR5643660	five period of Gastrodia elata	37.300
	SRR5643661	five period of Gastrodia elata	31.760
	SRR5643662	five period of Gastrodia elata	41.260
	SRR5643663	five period of Gastrodia elata	39.480
	SRR5643664	five period of Gastrodia elata	44.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.350
SRP279888	Gastro	Gastrodia elata tuber	40.70
	Juven	Juvenile tuber	66.44
	Mother_Gastro	Mother tuber of Gastrodia elata	49.10
	Mother_Juven	Mother tuber of Juvenile	51.81