Detail information of GWHGAAEX010538/evm.TU.scaffold_3.212
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|315122065|ref|YP_004062554.1| | 3.00E-16 | A/G-specific adenine glycosylase [Candidatus Liberibacter solanacearum CLso-ZC1] |
| KOG | KOG2457 | 5.00E-24 | A/G-specific adenine DNA glycosylase |
| nr | gi|586780123|ref|XP_006858703.1| | 2.14E-29 | hypothetical protein AMTR_s00066p00103210 [Amborella trichopoda] |
| Swissprot | tr|F4JRF4|MUTYH_ARATH | 2.00E-24 | A/G-specific adenine DNA glycosylase |
| trEMBL | tr|U5DD80|U5DD80_AMBTC | 8.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:ERN20170.1} |
| TAIR | AT4G12740 | 5.00E-24 | HhH-GPD base excision DNA repair family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 13658984 | 13661439 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010538
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03575 | mutY | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.030 |
| SRR2545915 | Juvenile tuber | 0.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.970 |
| SRR5643514 | five period of Gastrodia elata | 1.010 | |
| SRR5643515 | five period of Gastrodia elata | 0.780 | |
| SRR5643524 | five period of Gastrodia elata | 0.620 | |
| SRR5643525 | five period of Gastrodia elata | 0.330 | |
| SRR5643528 | five period of Gastrodia elata | 0.440 | |
| SRR5643658 | five period of Gastrodia elata | 0.400 | |
| SRR5643659 | five period of Gastrodia elata | 0.630 | |
| SRR5643660 | five period of Gastrodia elata | 0.770 | |
| SRR5643661 | five period of Gastrodia elata | 0.670 | |
| SRR5643662 | five period of Gastrodia elata | 0.770 | |
| SRR5643663 | five period of Gastrodia elata | 0.570 | |
| SRR5643664 | five period of Gastrodia elata | 0.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.88 |
| Juven | Juvenile tuber | 0.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.94 | |
| Mother_Juven | Mother tuber of Juvenile | 0.30 |