Detail information of GWHGAAEX010558/evm.TU.scaffold_30.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|22299394|ref|NP_682641.1| | 0 | preprotein translocase subunit SecA [Thermosynechococcus elongatus BP-1] |
| nr | gi|743816603|ref|XP_010930688.1| | 0 | PREDICTED: protein translocase subunit SECA2, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|D8WUA4|SECA2_ARATH | 0 | Protein translocase subunit SECA2, chloroplastic (Precursor) |
| trEMBL | tr|F6H0I5|F6H0I5_VITVI | 0 | Protein translocase subunit SecA {ECO:0000256|RuleBase:RU003874} |
| TAIR | AT1G21650 | 0 | Preprotein translocase SecA family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000033 | 1531368 | 1588319 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010558
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07517.13 | SecA_DEAD | 96 | 461 | 3.10E-116 |
| PF01043.19 | SecA_PP_bind | 312 | 418 | 3.70E-28 |
| PF07516.12 | SecA_SW | 779 | 1053 | 3.80E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03070 | secA | Protein export | map03060 |
| Bacterial secretion system | map03070 | ||
| Quorum sensing | map02024 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006605 | Biological Process | protein targeting |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0017038 | Biological Process | protein import |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 82.060 |
| SRR2545915 | Juvenile tuber | 67.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.350 |
| SRR5643514 | five period of Gastrodia elata | 27.920 | |
| SRR5643515 | five period of Gastrodia elata | 25.820 | |
| SRR5643524 | five period of Gastrodia elata | 24.830 | |
| SRR5643525 | five period of Gastrodia elata | 30.950 | |
| SRR5643528 | five period of Gastrodia elata | 29.270 | |
| SRR5643658 | five period of Gastrodia elata | 26.430 | |
| SRR5643659 | five period of Gastrodia elata | 34.640 | |
| SRR5643660 | five period of Gastrodia elata | 40.760 | |
| SRR5643661 | five period of Gastrodia elata | 34.320 | |
| SRR5643662 | five period of Gastrodia elata | 41.360 | |
| SRR5643663 | five period of Gastrodia elata | 42.640 | |
| SRR5643664 | five period of Gastrodia elata | 47.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 49.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.91 |
| Juven | Juvenile tuber | 43.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.17 | |
| Mother_Juven | Mother tuber of Juvenile | 38.39 |