Gene detail

Detail information of GWHGAAEX010562/evm.TU.scaffold_30.35

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4374	2.00E-16	RNA-binding protein Bicaudal-C
nr	gi\|672140008\|ref\|XP_008793808.1\|	3.70E-87	PREDICTED: protein bicaudal C homolog 1-like isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M0TJ30\|M0TJ30_MUSAM	2.00E-78	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P19930_001}
TAIR	AT5G48680	2.00E-16	Sterile alpha motif (SAM) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	1711842	1736145	+

Transcript Sequence
>GWHTAAEX010562 ATTTTATTTCCATGTAACAGCATTCTCACGTGATTCGCTTACGATATCTTCATTTGACGAAAGAACCCTAATCCTCTCAGCGATTGTCTTTTTGTTCGCTCCGCCGCCGTTCTTTTCTCTTCGGCATCGTTTTCTTCTCCATTGAGGCACGAGCCACGGTTGCCGAGACGTTTCCTTCTATTGTCCTTCTCTTCACCACGGTCGCCCCAACTGTCCAACTCCGCAAGAAGCCGACGCACTTTGCTTCTCGACGCACCAGGAAAGAAGACTACGGGAAGAAGTTGCCTATTTGTTACCATGTCACCATAATGCTGGGTGGGATTGGGAAGCTTGTGAAGAAAGAATACTGAGAAGATGTCTGCTCGTCACCAAGTCACCATAACATTGGGTGGGAGCAAGCAGGTTGTCAAAAGACCAAGGATGGTATCGGATGTCAGTAGCTCTTGCTACGATACATCTTTGGAGGGAAAGAGGTCAGTTAGAGAAAGGCTGGGGAGCAATCTAGATTATGAACTTTCTTATGAAAATCAGTATAACAAAAGACCGAGGTCCAGTAGTTTTGATTCAAGTAACTATCACATGAAAGATGCAAGGCTACACATATCAAATATCACAGTTAGTCGTGATGATCTCAGATACAAACTATTGAGCAAAGGTCAAACCAGAAGTGTAACTGATTTTGATGGACAAAATGGTGTAGATCTTCGCGAGAAGCTTTCTCGAAGCTCTCGTATCTCATTAGGAAATGAGGTGAGGAGAAATGTGATTCAACCAAAACCCTCCACCCTTAGAAGGGGATTACCACCTACTAGAAGTGCTGATGATTTTACTCGGATGGATTCATCGAGAAAATCCTACCCTCCATTGGCAGTGAGTGAATTAAGGCATAGATCACCAGATAAAATATTAAGCATTTCTAGGCGAACATCTCCACGAACAGTCTATGATGATGTGAGACGTATCCCATCTGCCAGGTCTTATGATAACTCAAGATCAAAAGATCTTATGACAAGAAGTATTCCTGAGACTTCAAGGCCAGTTGCTTTCATGGGAAAAACTGTGGTTCCTGTTGATGCTTCAAAATCTAGCTTCCATACTCTTCCTGGAGGTGTACGGAAAAACCCTTATATGCCTGAGGAAGCCCTTTCTGTTGCTGCCTTGTTACATGGACTGGGTTTAGGGAAATACTCCATCAACTTCCAGGCGGAGGAGATTGACATGACAGCACTCAGGCAAATGGGAGACAATGACCTGAAGGAGCTGGGAATACCAATGGGGCCTAGGAAAAAGATCTTGCTCGCCCTTTTGTCTCGATCAAAACAACGGCCTCAACATTGAGAGAAAAAGTTTTGTTCGAATTACTGGTATTTCGTTTACTTAAAAAATGTTAATAATTTGAAGTGATTTTGTAAATCATTTGAACAGCCACTCATTAGGGTTACTTTCTCTTGAGTTCATGTCCTGTAAGATTGTTTCTGAACTTGTGAAAATTCCATTGCATCAGCCGTATTTTACCCCTGTAAGATTGTTTCTGAACTAATGCTGGTTTGTTCAACCACACTTGAGGGCTTTAATGTTGAGCACTAATATGGTTTTGGACACTAGAGAGCTGCAGGCTTTTTTCCTGCATGTTTTGATAAAAGCACGGATATATTGCAA

Network for GWHGAAEX010562

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00536.29	SAM_1	265	317	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.150
SRP064423	SRR2545915	Juvenile tuber	37.830
SRP108465	SRR5643513	five period of Gastrodia elata	47.960
	SRR5643514	five period of Gastrodia elata	47.130
	SRR5643515	five period of Gastrodia elata	41.580
	SRR5643524	five period of Gastrodia elata	44.840
	SRR5643525	five period of Gastrodia elata	28.860
	SRR5643528	five period of Gastrodia elata	28.870
	SRR5643658	five period of Gastrodia elata	26.920
	SRR5643659	five period of Gastrodia elata	34.930
	SRR5643660	five period of Gastrodia elata	33.250
	SRR5643661	five period of Gastrodia elata	33.070
	SRR5643662	five period of Gastrodia elata	34.380
	SRR5643663	five period of Gastrodia elata	31.070
	SRR5643664	five period of Gastrodia elata	31.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.010
SRP279888	Gastro	Gastrodia elata tuber	40.55
	Juven	Juvenile tuber	49.65
	Mother_Gastro	Mother tuber of Gastrodia elata	36.49
	Mother_Juven	Mother tuber of Juvenile	39.66