Detail information of GWHGAAEX010569/evm.TU.scaffold_30.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|55981119|ref|YP_144416.1| | 1.00E-20 | DNA polymerase beta family protein [Thermus thermophilus HB8] |
| KOG | KOG2534 | 3.00E-164 | DNA polymerase IV (family X) |
| nr | gi|672172797|ref|XP_008806504.1| | 0 | PREDICTED: DNA polymerase beta isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|D7TNM4|D7TNM4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI32097.3} |
| TAIR | AT1G10520 | 3.00E-164 | DNA polymerase lambda (POLL) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000033 | 2225079 | 2291169 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010569
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14716.5 | HHH_8 | 268 | 333 | 8.10E-15 |
| PF10391.8 | DNA_pol_lambd_f | 354 | 400 | 1.80E-16 |
| PF14792.5 | DNA_pol_B_palm | 403 | 516 | 8.60E-29 |
| PF14791.5 | DNA_pol_B_thumb | 524 | 595 | 6.60E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03512 | POLL | Base excision repair | map03410 |
| Non-homologous end-joining | map03450 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity |
| GO:0034061 | Molecular Function | DNA polymerase activity |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.430 |
| SRR2545915 | Juvenile tuber | 12.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.760 |
| SRR5643514 | five period of Gastrodia elata | 8.950 | |
| SRR5643515 | five period of Gastrodia elata | 6.660 | |
| SRR5643524 | five period of Gastrodia elata | 8.000 | |
| SRR5643525 | five period of Gastrodia elata | 10.370 | |
| SRR5643528 | five period of Gastrodia elata | 7.040 | |
| SRR5643658 | five period of Gastrodia elata | 14.140 | |
| SRR5643659 | five period of Gastrodia elata | 7.830 | |
| SRR5643660 | five period of Gastrodia elata | 9.220 | |
| SRR5643661 | five period of Gastrodia elata | 6.950 | |
| SRR5643662 | five period of Gastrodia elata | 7.950 | |
| SRR5643663 | five period of Gastrodia elata | 7.620 | |
| SRR5643664 | five period of Gastrodia elata | 7.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.73 |
| Juven | Juvenile tuber | 6.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.63 | |
| Mother_Juven | Mother tuber of Juvenile | 7.31 |