Detail information of GWHGAAEX010572/evm.TU.scaffold_30.51


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743830468|ref|XP_010934430.1|4.93E-116PREDICTED: uncharacterized protein LOC105054589 isoform X1 [Elaeis guineensis]
trEMBLtr|M0THV9|M0THV9_MUSAM5.00E-113Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P15720_001}
TAIRAT5G581302.00E-58RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003325589152584458+
Transcript Sequence

Network for GWHGAAEX010572

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.870
SRR2545915Juvenile tuber35.240
SRP108465SRR5643513five period of Gastrodia elata27.100
SRR5643514five period of Gastrodia elata24.730
SRR5643515five period of Gastrodia elata24.400
SRR5643524five period of Gastrodia elata25.720
SRR5643525five period of Gastrodia elata22.170
SRR5643528five period of Gastrodia elata21.730
SRR5643658five period of Gastrodia elata22.200
SRR5643659five period of Gastrodia elata29.300
SRR5643660five period of Gastrodia elata28.870
SRR5643661five period of Gastrodia elata29.290
SRR5643662five period of Gastrodia elata24.590
SRR5643663five period of Gastrodia elata27.410
SRR5643664five period of Gastrodia elata24.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.070
SRR6049655Rhizomagastrodiae_C368-T10_good_121.650
SRR6049656Rhizomagastrodiae_C368-T07_good_124.520
SRR6049657Rhizomagastrodiae_C368-T07_good_126.530
SRR6049658Rhizomagastrodiae_C368-T04_good_125.100
SRR6049659Rhizomagastrodiae_C368-T04_good_127.430
SRR6049660Rhizomagastrodiae_C368-T01_good_125.110
SRR6049661Rhizomagastrodiae_C368-T04_good_126.090
SRR6049662Rhizomagastrodiae_C368-T01_good_125.530
SRR6049663Rhizomagastrodiae_C368-T01_good_124.190
SRR6049664Rhizomagastrodiae_C368-T10_good_126.120
SRR6049665Rhizomagastrodiae_C368-T10_good_126.120
SRP279888GastroGastrodia elata tuber 39.66
JuvenJuvenile tuber50.10
Mother_GastroMother tuber of Gastrodia elata 27.75
Mother_JuvenMother tuber of Juvenile 47.13