Detail information of GWHGAAEX010573/evm.TU.scaffold_30.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|556567610|ref|YP_008736035.1| | 1.00E-21 | glycoside hydrolase family protein [Actinoplanes friuliensis DSM 7358] |
| nr | gi|672172811|ref|XP_008806512.1| | 1.17E-77 | PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LJR7|XTH3_ARATH | 1.00E-74 | Xyloglucan endotransglucosylase/hydrolase protein 3 (Precursor) |
| trEMBL | tr|I1KZ59|I1KZ59_SOYBN | 7.00E-77 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT3G25050 | 4.00E-74 | xyloglucan endotransglucosylase/hydrolase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000033 | 2624491 | 2625704 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010573
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 28 | 204 | 8.30E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.090 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.420 |
| SRR5643514 | five period of Gastrodia elata | 0.070 | |
| SRR5643515 | five period of Gastrodia elata | 0.690 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.090 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.080 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.09 |