Gene detail

Detail information of GWHGAAEX010576/evm.TU.scaffold_30.57

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434399872\|ref\|YP_007133876.1\|	4.00E-21	WD-40 repeat-containing protein [Stanieria cyanosphaera PCC 7437]
KOG	KOG2096	0	WD40 repeat protein
nr	gi\|743775854\|ref\|XP_010918319.1\|	0	PREDICTED: transducin beta-like protein 2 [Elaeis guineensis]
Swissprot	tr\|B7FNU7\|LIS1_PHATC	3.00E-09	Lissencephaly-1 homolog {ECO:0000255\|HAMAP-Rule:MF_03141}
trEMBL	tr\|M0RNC5\|M0RNC5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P00940_001}
TAIR	AT4G00090	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	2754377	2815484	+

Transcript Sequence
>GWHTAAEX010576 GTGGTGTGAAAGGTACTTGCTAGATTGGGCTTTTCTTACACTCGCTCTTCCTCCGTCTCGCTCGCCTCTGACGGCTGAAAATTATGCCGACGCCATCTCCAACCATCCTACGGCTCTCTGCCATCTCCATTCCTCTTTTGTCGATCATTGTTGGCGGCGTTCTCGTTCTACTCCTATTCGCAGATTACTTCCGCCGGAAGCGCGCTGACTTCGCGGCCATTACTGGTTCACCAGAGCACAAGCCTGCCGAACAAAAGCCCGATGTAAAACCTCCTCCATCCTCCTTCCGAAAATCTCATGCTAGGTCTCATCAATCTCATGCTACGGATAAGGATCAGAACTACAAGAGACATCACCCTCTCGATATCAACACCTTGAAGGGCCACGTTGATACCATCACCTCTATTTGTTTCTCGTCGGATGGCCGAAATCTAGGCACTACTTGTTCGGATGGAATAGTTAGAATCTTCACACTGGACGATGTTTCCAATAGAAGTTTCAAGCTTTTGAAAATTAATCTGCCAGCTGGTGCACAACCTACTGCTATTACTTTCTTGGAGGGAGCTTTCTCCCTTGTTGTGGCTGCTCAGGTTCTTTCTGGGTCATGTCTTTACATGTACGGGGATGTCATTTTGAAAGCTCCTGGCGACGGAAAGCAGAACGCTAAGGTTCCTGCACCAGAGATAAAATGGGAGCATCATAAGATACATGAGATGAGGTCTGTCCTGACACTTGTTGGGGTCCCGTCAACTTATGGATCTGGCGATGGGAGCGTGATCATTGCTTCATGCTCCGAAGGTACTGATATTAAGCTGTGGCATGGCAAAAGTGGTAAAGAGTTGGCAACTGTTGACACAAATCAGTTGAAAAATAACATGGCTGCTATGTCTCCTAATGGACGTTTCCTATGTGCTGCAGCTTTTACTGCTGATGTGAAGGTTTGGGAAATTATTTATGCAAAAGATGGTTCTGTGAAGGAGGTTTTGAAGGTTATGCAATTGAAGGGACACAAGAGTGCAGTCACGTCTTTGTGCTTCACTCCAAATTCAGAGAGTGTAATTACTGCATCTAAAGATGGTACCATTAGAATATGGAATATCAATGTGCGTTATCATCTTGATGAAGATCCAAAGACGATAAAATTATTTAAGATTCCACTCAAAGATGCCAAAGGAACTTCATTACTGTATGATCATATCAGCATCTCTCCCGATGGGAAAATCCTTGCAGTAACTTGTGGTCCTATATTGCAATGGCTATATGCTGAAACAGGGGAGGTGTTGGATATAGCTGATAAATCTCATGAAGGTGACATTACGGGCATTGCATGGGCTCCTCAACTGATTCCAATGGGGAACACCCAAGCAGCTGTTTTGGCTACTGCTAGTACAGATAAAAAAGTGAAACTATGGCTAGCTCCAGGCCTGCATCCTTCTTCATGATCTGTTCCAAAAGCTTATACTTCCCAATTATCTCACAAAAGTCTTTTTGATAAAAAAGAATGTGTGACAATAAGTCTTCAGGAGTGCATTTGGCCTGTTCTGTTAGAACTGAGCTTTGAACCATTGATCATCTTAGCCCGCCAAAGCGTGCACTAAGAAGAAAATCAGTGGATAAAATTTTGCTCTTTTTATATCGTACAAGTCACAATCCTTGTTCATCATAGTTGTCAATATACTTTTTATTAGCCTATTTAAGTTATTTTCAATCGCATATGCCTGCT

Network for GWHGAAEX010576

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	96	129	2.40E-05
PF00400.31	WD40	304	338	4.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.820
SRP064423	SRR2545915	Juvenile tuber	44.650
SRP108465	SRR5643513	five period of Gastrodia elata	41.430
	SRR5643514	five period of Gastrodia elata	47.170
	SRR5643515	five period of Gastrodia elata	38.760
	SRR5643524	five period of Gastrodia elata	48.050
	SRR5643525	five period of Gastrodia elata	36.400
	SRR5643528	five period of Gastrodia elata	40.670
	SRR5643658	five period of Gastrodia elata	35.010
	SRR5643659	five period of Gastrodia elata	48.190
	SRR5643660	five period of Gastrodia elata	50.280
	SRR5643661	five period of Gastrodia elata	54.060
	SRR5643662	five period of Gastrodia elata	53.690
	SRR5643663	five period of Gastrodia elata	53.470
	SRR5643664	five period of Gastrodia elata	53.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	54.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	54.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	54.340
SRP279888	Gastro	Gastrodia elata tuber	56.82
	Juven	Juvenile tuber	57.93
	Mother_Gastro	Mother tuber of Gastrodia elata	30.43
	Mother_Juven	Mother tuber of Juvenile	33.04