Gene detail

Detail information of GWHGAAEX010578/evm.TU.scaffold_30.61_evm.TU.scaffold_30.62

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681693\|ref\|YP_001864889.1\|	4.00E-68	hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
KOG	KOG0271	0	Notchless-like WD40 repeat-containing protein
nr	gi\|672128379\|ref\|XP_008787676.1\|	0	PREDICTED: notchless protein homolog [Phoenix dactylifera]
Swissprot	tr\|Q9FLX9\|NLE1_ARATH	0	Notchless protein homolog
trEMBL	tr\|M0SIS1\|M0SIS1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P29050_001}
trEMBL	tr\|M0SIS1\|M0SIS1_MUSAM	2.00E-10	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P29050_001}
TAIR	AT5G52820	0	WD-40 repeat family protein / notchless protein, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	3006979	3050401	+

Transcript Sequence
>GWHTAAEX010578 CTTTTTTGCATACGGAGGATTTGATGGTTTACCCAAAGTAACTCTTGAATAAATTCTTCAACTGAACCGGAGGCTCCTAGGGTTTTAGCGTTCAAATATAATCTTCGCTCATTATCTGTCTCACAATTCGTTTCTCTTTGGTCCGACATTACTTCTTCCACTGAGAGATCATATTCATCCGTCGTGCTGCATATTTCATTGTAATATTTAGGATATGGAGATGGCCACTGACGGTGGAGAAATGAACAGCAACAACAGCGTGATGTGCTTACTGACGAATCCCGAAGGAGAACCTCTATGTGCATCACTTTATCTTCCGCAGAACGCTGGTCCCCTTCAGCTACAAGAAATTGTCAATAAACTCCTTCAAAACGAAGAAAAACTACCGTATGCATTTTACATATCAGATCAGGAGCTTGTTGTGCAACTCGGAGACTATTTACAAAAGAATAAAGTATCGGTGGAGAAGGTACTACGCATAGTGTACCAACCTCAAGCAATTTTCCGAATTCGTCCGGTCAATCGATGTTCAGCTACAATTGCAGGTCATACAGAAGCTGTACTTTCCGTTGCTTTTAGCCCTGACAGTCGAAATCTTGCAAGTGGATCTGGTGATACAACTGTAAGATTTTGGGACCTTAATACACAGACACCATTGTTTACTTGTTCAGGACATAAAAATTGGGTGCTATGCATTGCTTGGTCGCCAGATGGAAATCATTTAGTGAGTGGTAGCAAGTCTGGGGAACTTCTGTTGTGGGATCCTCGAACGGGGAAACAATCTGGCAATTCTTTTATTGGACACAAAAAGTGGATTACTGGTATTTCTTGGGAACCTGCTCACTTGCAAGTTCCATGTCGACGTTTTGTTAGTTCTAGCAAGGATGGAGATGCCCGAATTTGGGATATTTCGTTGAGGAAGTGCACTATTTCTCTTACCGGCCACACTCTTGCTGTAACATGCGTTAAATGGGGGGGTGATGGAGTGATATACACGAGTTCTCAGGATTGTACAATAAAGGTTTGGGAAACTGCACAAGGAAAGTTGATCCGTGAATTGAAGGGACATGGGCATTGGGTCAACTCACTTGCTTTGAGCACTGAGTACACCCTGCGAACTGGTGCATTTGATCATACTGGAAAAATATATTCATCTGCAGAGGAAATGAAAGAGTCAGCTCTTGCAAAATACAACAAAATGAAGGGCAGTGCTCCTGAAAGACTTGTTTCTGGTTCTGATGATTTTACTATGATTCTCTGGGAACCTGCTATCAGTAAACATCCAAAAGCTCGCTTAACTGGTCACCAGCAGCTTGTAAACCATGTATACTTCTCTCCTGACGGACAATGGTTGGCTAGTGCATCATTTGACAAATCAGTCAAGTTGTGGAATGGCATCACTGGGAAATTTGTTGCGTCCTTCAGGGGACACGTTGGACCAGTATACCAGATCAGCTGGTCAGCTGATAGTAGGCTACTTCTAAGTGGAAGCAAGGATTCTACACTCAAGGTTTGGGATATCCGAAAGCAAAAGTTGAAGCAAGATCTTCCAGGTCATGCGGATGAGGTATTTGCTGTGGACTGGAGTCCAGATGGTGAGAAGGTTGCATCTGGTGGTAAGGACAGGCTAATAAAATTGTGGATGGGCTAGAAAGGTGTATAGACTGTCATATATCTCATATATGAAAAGGTTATTAAAAAGTTCTATAACTAGAATTTACAATTTAAAATATATATTTCTTAATAGGTCTCACATTCAAAAGTTGATTTAATTATGTTTTTTTTGTGAGAATTTTTTTTTGTATTTTTTAGAGTTATTTGGGATTATTACATCATCTCTCTCAATCTGTCAAGTGATGAAAAAAACATGCAATTATATTCTATTAAATCTTATTGCTTCAGGAACCAAGAAGG

Network for GWHGAAEX010578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08154.11	NLE	20	76	8.00E-11
PF00400.31	WD40	104	141	3.80E-08
PF00400.31	WD40	146	183	1.90E-08
PF00400.31	WD40	192	231	0.00094
PF00400.31	WD40	236	271	1.00E-05
PF00400.31	WD40	276	349	0.05
PF00400.31	WD40	360	393	6.10E-09
PF00400.31	WD40	398	435	1.20E-08
PF00400.31	WD40	442	476	6.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.340
SRP064423	SRR2545915	Juvenile tuber	41.260
SRP108465	SRR5643513	five period of Gastrodia elata	28.060
	SRR5643514	five period of Gastrodia elata	27.710
	SRR5643515	five period of Gastrodia elata	25.240
	SRR5643524	five period of Gastrodia elata	30.760
	SRR5643525	five period of Gastrodia elata	27.500
	SRR5643528	five period of Gastrodia elata	22.420
	SRR5643658	five period of Gastrodia elata	22.090
	SRR5643659	five period of Gastrodia elata	45.270
	SRR5643660	five period of Gastrodia elata	46.370
	SRR5643661	five period of Gastrodia elata	39.930
	SRR5643662	five period of Gastrodia elata	39.400
	SRR5643663	five period of Gastrodia elata	36.720
	SRR5643664	five period of Gastrodia elata	39.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.990
SRP279888	Gastro	Gastrodia elata tuber	46.41
	Juven	Juvenile tuber	39.92
	Mother_Gastro	Mother tuber of Gastrodia elata	20.19
	Mother_Juven	Mother tuber of Juvenile	22.02