Gene detail

Detail information of GWHGAAEX010587/evm.TU.scaffold_30.85

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385809101\|ref\|YP_005845497.1\|	1.00E-158	Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511]
KOG	KOG0133	0	Deoxyribodipyrimidine photolyase/cryptochrome
nr	gi\|731380047\|ref\|XP_002266483.2\|	0	PREDICTED: deoxyribodipyrimidine photo-lyase [Vitis vinifera]
Swissprot	tr\|Q9SB00\|PHR_ARATH	0	Deoxyribodipyrimidine photo-lyase
trEMBL	tr\|A0A061G3P0\|A0A061G3P0_THECC	0	Photolyase 1 isoform 1 {ECO:0000313\|EMBL:EOY24490.1}
TAIR	AT1G12370	0	photolyase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	3785003	3842917	-

Transcript Sequence
>GWHTAAEX010587 CAAAATAGAACTTTAAACTATGTGAACATGAAAACATACACTCAACGAACTTTTCTCTATATTAGAAGTCTTTTCAATATTTGTGTCATTGTGTTTAATTTCCATATCAACTATTTTCCACACAATACAAGATATAATATTAATTTGATGAAAATAATTATATTTATTCAATTAAAAAAAGCATTGAACCTTCTGAGGTCATTTGTGTTGGTTCAAAGATCGTCTTTTACTGACTATTAAGAGAAAAATATTTGTATTAGTATGGTCGCCCCCCTCTATCTCGGTCAATAACTGCTACAACGCCCGACGGGAGATTAATTGAAGGAATACGGCGTCCGAGGAATCGAAGCACGGCGGCGCCCGTCGGGAGAGGAATCGAAGGTAAGCGTGCGCCAGGGATTCGTCGCCTCCCTCTATCTGGCCGAGGAGAGGAACGAAGAGGATGCGGGATTTATTTTCTCCGTATCGGCTAACCCTAGAATATCACCGTATCTGGCTGAGGACAAGAACCACGGATCTTTATTTCATATTCACATAGACGCGTCATCGCCACCTTGAATGTCCACGTCATCGTCACATCGCCACGTAGATTGAGTTTTCGTCGGTTACAGGTTAGGCATAATCTATTTCTAAATCTCTATTTCAAAACGCCACACTACTATTACTTCAGCCCCACCCCTCCCTCCCTTGCCCTTACAATCCATGGCCGCCGCCGCCGTTCATCCCGGCCGCATTCACCTTCTGAATTCCTCCAAAACTCCTTTGGCCGGGTCTCGAGCAGGACCCATAGTCTACTGGATGTTCCGCGACCAACGTTCCCGCGACAACTGGGCCTTAATCCACGCCATCCAGCTCGCAAACCGCTCATCCGCTCCCATCGCCGTCGCCTTCAATCTCTTCCACCGTTTCCTCGGCGCTCACGCTCGCCAGCTTGGATTCATGCTCCGCGGACTCAATCTCCTCCGCCACCGCCTGCGCCACCTCGGAATCCCCTTCTTCCTCTTACGGGGAGACGCCGTCGATACTATTCCCAAATTCCTCCGCCAATGCGGCGCCTCTGCGCTAGTTACGGATTTTTCGCCGCTTCGATCTGTGCGGAAATGGAAGTCGGAGATTTGTGAGGTGCTTGGAGAGGGTGTGGCGGTTTATGAGGTGGACGCGCATAATGTTGTTCCGGTTTGGGTTGCATCTGATAAGTTGGAGTATAGCGCGAAGACGATTAGAACGAAACTTCGGAGGGTTTTGTATGAGTATCTCGTGGAGTTTCCCGAGATTTCCAAGCCGGATTTTCAATGGTGTTTGGGGGATCCAGAGGATTTGGATTGGGACATGCTACTAGCCGAGGCTCTCAGAGAGGGAAGCGAAGTACCAGAGATTGAGTGGTGTCAACCCGGGGAGGATGCAGGGATGGAGGTTTTGATGGGCAGCAAGGATGGATTTTTGACGAAGAGGCTGAAAAACTTTAGCGTTGATAGGAACAATCCTACGATGCCAAGAGCACTGTCATGTCTCTCTCCTTACATTCATTTTGGTCAGATATCAGCACAGCGCTGTGCTTTGGAGGCACACAAACTTAAAAAGTCTTATCCTCAGGCAGAAGAAGCTTTCTTGGAGGAGTTGATTGTGAGGAGAGAATTGGCAGATAATTTTTGCTATTACCAACCCCATTATGACTCATTACTAGGTTCTTGGGATTGGGCTCGAAGATCCTTGATGGACCATGCTGTTGATAAAAGAGAGCATCTGTACACGAGAGATGAATTAGAAAATGCAAAAACAGCTGATCCTCTATGGAATGCATCGCAGTTGGAAATGGTTCATCATGGGAAAATGCATGGTTTTATGCGAATGTATTGGGCCAAGAAAATTCTCGAGTGGACAAGTGGACCTGAAGAAGCACTTGCAACGGCAATATATTTGAATGATAAGTATGAGATAGACGGTAGAGATCCAAATGGCTATGTGGGTTGCATGTGGTCCATATGTGGCGTTCATGACCAGGGCTGGAAAGAACGTGCAGTTTTTGGAAAAATAAGGTACATGAATTTTGCAGGGTGCAAAAGGAAATTTGACGTAGATGGTTACATTGCTTATGTGAAAGGCCTTGCTATAGAAAACGTGAAGAGGAAGGCAGAAAATGCAACAAGTACAATGGCAAAGAAGTCCAGAACTTGACGCAGAATGATGTGTTGAAGCTCAGTCAGGCTGATATCCTGTAAAAGTGTTGTCTGGAGTAGGCCTTTGTTGATATCCTGCCAAATAATAATGCAGTAGATAGCCAGTTACATTTTATTCAGGTTGAATCTAAAAGTTTCAAATCTTAGGAAGAGGTATATGGAAAAATATTGATCTTGTTTTGTAATTATGATATGTAATGACATTCAAATATTGGTTAGTTTGCTTGTATTGTTAAACTTGCGATGAAGGTATATTCCATGTTTTATTACCAGCTGCTCGATTTGCATGATATAACTGAGTATGCATAACACATAAGCA

Network for GWHGAAEX010587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00875.17	DNA_photolyase	30	190	1.60E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006281	Biological Process	DNA repair
GO:0003904	Molecular Function	deoxyribodipyrimidine photo-lyase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.560
SRP064423	SRR2545915	Juvenile tuber	16.420
SRP108465	SRR5643513	five period of Gastrodia elata	43.210
	SRR5643514	five period of Gastrodia elata	40.200
	SRR5643515	five period of Gastrodia elata	43.190
	SRR5643524	five period of Gastrodia elata	40.400
	SRR5643525	five period of Gastrodia elata	55.430
	SRR5643528	five period of Gastrodia elata	45.720
	SRR5643658	five period of Gastrodia elata	66.800
	SRR5643659	five period of Gastrodia elata	53.780
	SRR5643660	five period of Gastrodia elata	57.590
	SRR5643661	five period of Gastrodia elata	54.190
	SRR5643662	five period of Gastrodia elata	54.800
	SRR5643663	five period of Gastrodia elata	57.710
	SRR5643664	five period of Gastrodia elata	65.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.730
SRP279888	Gastro	Gastrodia elata tuber	42.80
	Juven	Juvenile tuber	69.38
	Mother_Gastro	Mother tuber of Gastrodia elata	38.25
	Mother_Juven	Mother tuber of Juvenile	51.50