Gene detail

Detail information of GWHGAAEX010591/evm.TU.scaffold_30.92

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|156938170\|ref\|YP_001435966.1\|	1.00E-63	elongation factor EF-2 [Ignicoccus hospitalis KIN4/I]
KOG	KOG0467	0	Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins
nr	gi\|743831299\|ref\|XP_010934647.1\|	0	PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Elaeis guineensis]
Swissprot	tr\|O23755\|EF2_BETVU	3.00E-131	Elongation factor 2
trEMBL	tr\|A0A067LFR6\|A0A067LFR6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42954.1}
TAIR	AT3G22980	0	Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	4216680	4220101	-

Transcript Sequence
>GWHTAAEX010591 CTTTTCCTTGCCACCAAAGTCTGGCATCGATTGTGCCCTAATCTATACTAGTTTCTCCGTTGAAGCGAGATTCCGATGCCGGATTGGGAAGGCGGAAAGATTCGCAACATCTGCATCCTAGCGCACGTCGACCATGGAAAAACGACCCTTGCAGACCAGCTGATCGCAGGCCATGGCGGCGGGGTGCTCCACCCGAAGCTGGCCGGGAGCGTGCGCTTCATGGACTACCTCGACGAGGAGCAGCGCCGCGCCATCACCATGAAAAGCTCGGCCATCTCTCTCCTCTTCCGCGGCCATTCCATCAACCTGATCGATTCCCCCGGGCACATGGACTTCTGCTGCGAGGTTTCCACCGCCGCTCGGCTCTCTGACGGAGCCCTCGTCCTCGTCGATGCCGTCGAAGGCGTCCACATCCAGACCCACGCCGTCCTCCGCCAAGCCTGGATCGAGAAGCTCGCCCCCTGCCTCGTTCTCAACAAGATCGATCGCCTCATCACCGAGCTCAAGCTCAGCCCCATGGAAGCCTACTCCCGCCTTTCGCGCATCATTCACGAGGTAAACGGCATCGTCTCTGCTTACAAGTCGGAGAAGTATCTTTCCGATGTCGATTCCTTGCTGGTAGGCGCCTCAGGCGATTCTGGAGGCTTCGATCAGGAGCTTCCCGAGGATGACAATGAGGACGCTTTTCAGCCCCAGAAGGGAAACGTGGCGTTCGCTTGCGCCTTGGATGGTTGGGGCTTCGGCATCCAACACTTTGCAGAGTTCTACGCTTCTAAGCTTGGCGCAAGTCTGACCGCTCTGAGAAAGGGCTTCTGGGGTCCCAAGTATTTCAACACTAAGAAGATGATGATCGTCGGGAAGAAAGGGATGCAAGGTGTCAGCAGGGATCCCCAGCCCATGTTTGTTCAGTTTGTGCTGAAGCCTTTGTGGCAGGTTTATCATGGAGCCCTAGATGGCAACAACGAGATGCTTCACAAAGTTATCAAAGCCTTCAATTTGTCTGTTCCTTCACGAGAATTGCAGAACAAGGATGCCAAGGCTGTGCTGCAGGCTGTTATGAGGCGATGGCTTCCGCTGTCTGACGCAGTATTATCAATGGTGATTGATTGCATGCCTGATCCTATCTCAGCCCAATCTTTGAGGATTTCTCGGTTGCTACCCAGAAGAGAACCCGCAATTATTGAAGATGGACTTTGCTCTGATGTTGTTGCAGAGGCCGAGGGTGTGAGGAAATGCGTTGAAGCTTGTGATTCTAGTGCGGCGGCTCCCTGTACTGTTTTTGTTTCAAAGATGTTTGCCGTTCCGAATAAATTGATCCCTCGGATAGGCCCAAATGGGGAGAAGTTGAGCCACTCATTGGCTGGAGAGGTTGGTAGCGGAGAATTGGAGGAATGTTTCCTTGCATTTGCAAGGATTTTTAGTGGCGTGCTTTATTGCGGCCAGAAGGTCTTTGTGCTGTCAGCTTTGTATGATCCATTACATGGAGAAGAGTCGCATAAGCATTTACAGGTAGCCGAGGTTCAGCGCCTGTATTTAATGATGGGCCAAGGTCTAAAACCCATTTTTTCAGCTTCTGCGGGAAATATAGTGGCTATTCAGGGCTTAGGGCAGTGCATTTTGAAGAGCGCGACACTATCTTCTACGAGAAATTGCTGGCCCTTTTCAAGTATGATGTTCCAAGTGGCACCAACTCTTCGAGTGGCCATTGAACCATCTGATCCGGCTAATATGGGTGCACTTATGAAGGGATTGAAACTTCTTAACCGTGCAGATCCGTTTGTTGAAGTTACTGTTTCATCCAGAGGGGAGCAGGTTATTGCTGCTGCAGGGGAGGTGCATCTTGAGAGATGTATAAAGGATTTAAAAGAAAGATTTGCTAAAGTTAGCATAGAGGTTTCACCCCCTCTTGTTTCATATAAAGAGACTGTTGAAGGAGGGGAAGGTCTTTCTTTCTTAGAAGCACTGAGGATTACTCCTGGAAGTACTCAATATGTTGAGAAAGTTACTCCAAATGGGCGATGTATGGTTAGAGTTCAAGTTGCAAGACTTCCGGATGCTTTGACTAAAATTCTCGAAGAAAATGGAGAAATTCTCGCCGATTTAATAGAAGGGAGGCCTATCAAGAAATATGAAAGCTTTGGCCGCGTTACAGATGTTGATGGTGATCCTGTAACAGTTCTTAGAAACCGCTTGTTTCATTCATTGGAGAATGAATTTACGCTCGATTCTGAAAAGAGTGAAAATGGTAGATTTGAGAAATATAAGCAGCTTTTTGATAGGTTTCTTACAAGAATATGGTCTCTTGGACCTAGGCAGGTTGGGCCAAATATTCTCCTAGCTCCAGATTCTAAAGCAAGTCAAGTTATTTTTACTAGCAGTGGGCAGTGCGGTTTTCTAGTACATGGTTCATGCCATGTGTCTGAGAAGCTAGGAATCTTATTAGATTCTAGTTCTGATGCAAATGTGAACACAGACAATAAAGAACCCTTAGAAGAAGCCAGCTCCTTATATAGGGAAGCAGAGGGTCTAAAAAACAGCATTGTCGCAGGTTTTCAATTAGCCACATCTGCTGGGCCTTTATGCGATGAACCTATGTGGGGCTTAGTCTTTTTGGTTGAGTCTTACATTTTTCCAGTCAATTCAGAGACCGAGGATCAGCTAGACCAATACGGTATTTTTAGTGGGCAAGTTATGATAGCCGTGAAGGAAGCTTGTAGAGCAGCCATGCTTCAAAACAAACCAAGGATTGCAGAAGCAATGTACTTTTGTGAGTTGAATACACCTGGTGATTTCTTGAAAAAAATGTATGCAGTTCTTTCAAGGAGGCGATCTAGAGTGTTGAAAGAAGAGCTGCAGGAAGGCTTCCGGCTTTTTACCGTTCATGCTTATGTTCCTGTAGCTGAAAGCTTTGGCTTTGCAGATGAGCTTAGGAAATCAACTGGAGCTGCTGCAAGTACTTTACTTGTTATCAGCCACTGGGAGGTGCTGCCAGAAGATCCCTTTTTTATTCCAACAACAGAGGAGGAGATGGAGGAATATGGAGATGGCTCTAGTGTCCTTCCAAATATGGCAAGAAAGCTTATTGACTCAGTGAGGAGAAGGAAAGGTCTTCATGTGGAGGAAAAAGTTGTCCAGCATGCAACAAAGCAGAGAACACTTGCAAGGAAGGTTTAATCGCTTCTTGTGAGTTTAATTAAAAAGCGCATATGTATACATGTATATTAGAGTTTTTGCTTATTCGTTCCCATATTATAGTTTCCAAATATCAATTATGCATTAAGAGTATCTAATTTTTGAAGATTTTGAAACTCAATTCTTTTATGTACTATTTATCTGATAATGGATAGTTTGTGTAGCGATTTGACTGTATGAAAGAAAACATTTTGATTTGCTTGCAACAGTATAGTCCAATAGTATTTCAC

Network for GWHGAAEX010591

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	8	297	1.70E-51
PF03144.24	GTP_EFTU_D2	442	520	8.70E-09
PF14492.5	EFG_II	538	607	3.20E-06
PF00679.23	EFG_C	891	975	9.30E-14

Protein Sequence

>GWHPAAEX010591
MPDWEGGKIRNICILAHVDHGKTTLADQLIAGHGGGVLHPKLAGSVRFMDYLDEEQRRAITMKSSAISLLFRGHSINLIDSPGHMDFCCEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLAPCLVLNKIDRLITELKLSPMEAYSRLSRIIHEVNGIVSAYKSEKYLSDVDSLLVGASGDSGGFDQELPEDDNEDAFQPQKGNVAFACALDGWGFGIQHFAEFYASKLGASLTALRKGFWGPKYFNTKKMMIVGKKGMQGVSRDPQPMFVQFVLKPLWQVYHGALDGNNEMLHKVIKAFNLSVPSRELQNKDAKAVLQAVMRRWLPLSDAVLSMVIDCMPDPISAQSLRISRLLPRREPAIIEDGLCSDVVAEAEGVRKCVEACDSSAAAPCTVFVSKMFAVPNKLIPRIGPNGEKLSHSLAGEVGSGELEECFLAFARIFSGVLYCGQKVFVLSALYDPLHGEESHKHLQVAEVQRLYLMMGQGLKPIFSASAGNIVAIQGLGQCILKSATLSSTRNCWPFSSMMFQVAPTLRVAIEPSDPANMGALMKGLKLLNRADPFVEVTVSSRGEQVIAAAGEVHLERCIKDLKERFAKVSIEVSPPLVSYKETVEGGEGLSFLEALRITPGSTQYVEKVTPNGRCMVRVQVARLPDALTKILEENGEILADLIEGRPIKKYESFGRVTDVDGDPVTVLRNRLFHSLENEFTLDSEKSENGRFEKYKQLFDRFLTRIWSLGPRQVGPNILLAPDSKASQVIFTSSGQCGFLVHGSCHVSEKLGILLDSSSDANVNTDNKEPLEEASSLYREAEGLKNSIVAGFQLATSAGPLCDEPMWGLVFLVESYIFPVNSETEDQLDQYGIFSGQVMIAVKEACRAAMLQNKPRIAEAMYFCELNTPGDFLKKMYAVLSRRRSRVLKEELQEGFRLFTVHAYVPVAESFGFADELRKSTGAAASTLLVISHWEVLPEDPFFIPTTEEEMEEYGDGSSVLPNMARKLIDSVRRRKGLHVEEKVVQHATKQRTLARKV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14536	RIA1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.870
SRP064423	SRR2545915	Juvenile tuber	12.790
SRP108465	SRR5643513	five period of Gastrodia elata	12.340
	SRR5643514	five period of Gastrodia elata	13.030
	SRR5643515	five period of Gastrodia elata	14.020
	SRR5643524	five period of Gastrodia elata	14.040
	SRR5643525	five period of Gastrodia elata	17.150
	SRR5643528	five period of Gastrodia elata	15.650
	SRR5643658	five period of Gastrodia elata	13.410
	SRR5643659	five period of Gastrodia elata	19.110
	SRR5643660	five period of Gastrodia elata	20.190
	SRR5643661	five period of Gastrodia elata	17.410
	SRR5643662	five period of Gastrodia elata	22.580
	SRR5643663	five period of Gastrodia elata	18.120
	SRR5643664	five period of Gastrodia elata	18.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.380
SRP279888	Gastro	Gastrodia elata tuber	17.17
	Juven	Juvenile tuber	17.07
	Mother_Gastro	Mother tuber of Gastrodia elata	16.56
	Mother_Juven	Mother tuber of Juvenile	19.21