Gene detail

Detail information of GWHGAAEX010595/evm.TU.scaffold_30.101

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|291286953\|ref\|YP_003503769.1\|	1.00E-38	peptidyl-prolyl isomerase [Denitrovibrio acetiphilus DSM 12809]
KOG	KOG0885	5.00E-154	Peptidyl-prolyl cis-trans isomerase
nr	gi\|743755194\|ref\|XP_010938218.1\|	0	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP57 [Elaeis guineensis]
Swissprot	tr\|Q6Q152\|CPY57_ARATH	0	Peptidyl-prolyl cis-trans isomerase CYP57
trEMBL	tr\|M0TMX1\|M0TMX1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P05680_001}
TAIR	AT4G33060	5.00E-154	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	4595834	4635540	+

Transcript Sequence
>GWHTAAEX010595 TTTTAGTTTTCGCGAGCTCAGGGGTAACGGAGACAGCAGGAGAGGTACAGAATTCAATCGGGGAAGCGCACGAGTTCTGTCAATGTCGTCTGTGTACGTATTAGAGCCTCCGACGAAAGGGAAGGTAGTGATGAATTCTTCGATGGGTCCCATCGACGTCGAGTTATGGCCCAAGGAGGCCCCTAAGGCCGTCCGCAACTTCGTGCAACTATGCCTTGAGGGTTACTACGACTGCACTGTCTTTCATCGGATCATCAAGTCCTTTCTAGTCCAAGGAGGAGATCCCACTGGTACCGGAACCGGCGGTGAAAGCATATACGGAGGTACGTTTGCTGATGAGTTCCATTCACGCATAAGATTTAACCATAGGGGTTTAGTGGCGTGTGCTAATGCTGGGTCTCCCCATTCAAATGGAAGCCAATTTTTTATGACATTAGACAGATGTGATTGGCTTGATCGCAAGAACACTATTTTTGGAAAGGTTACTGGAGATTCCATATATAATCTTCTAAGGTTGGGTGATATTGAGACAGATAAAGATGATATGCCAACTTATCCAGCTCCAAAAATTCTCTCTGTTGAGGTGTTGTGGAATCCTTTTGATGATATAGTCCCAAGGCAGGTACCTGAACGGCTTGCTACCCTGGCAAAGTCTGAAGCTGATCAGAATGAGCAAAAACAAAAAGCTATAAAGAAGCTTAATGTATTATCGTTTGGAGATGAAGTTGAAGAAGATGAGAATGAAACGGAAAACATCAAGGAAAAAATCAAGAGTATTCATGATGTGTTGGATGATCCTCGTTTCCTTAAAGAAAAACCAACAGAAGATCTGATGAATTCTGAAGAAACTGTGAAGAAGGAAATTCAGAAATCAGTCAGGGAGGCATTAACCTCAAAGAGAAATTTTCCTAATAAAGGCCAGGAAAGCGATGTGCCCTGTTCATTTGGTTACAGTAATAATGATGATGATGATGATTATGATGATGATATGGATGAGACCAATTTTGATGCAAGAATGCGCACACAGATTCTAAAGAAGCGCAGGGAGCTAGGGGACATTGTTATTCATGAAAAGCTTTCTACATCTGGAGGAAAAGGCAAATCCACTGAGAAAGACACAGTGCTGCTTCCAAGGATGGATGATGGTAGTTATTCAGGTCCAAAATCCAAGGTTGAAAAGCTTTCTGTAAAGAGAAAAGGTATTGGATCTGAAGCTAGGGCTGAACAAATAGTTCAAGCAGACTCTGATTTACTTCTGCTATCCCACACTGAGCAAGAACGGAGAATACAGAAACAGAAGAAACGCCGAAATCAGGGTCGTGAGGAAGATACACTTGCAAAACTCGAGAAATTCAAAAAATCTCTAGCTGGCAAGCACTTGGCATCCAGTTATAATAACTCAAACGACAATAATGCTGACGAGTCCAGATGGCTCTTGAATCCGTTAAAATTTGCTTCTGATCCTTCAGATGAAAAGGATGTAATGGCTCGGAAGGATGATCCAAATGAATATGTAGTGCACGATCCTCTTTTAGAGAAGGGCAAAGAAAAGTTCAACAGGATGCAAGCTAAGCTTAAGCGGCGTGAGCGAGAATGGGCCGGAAAATCTTTAACTTAACTTGCTTCTGTGTGTGACGTCCACACCATGCTTTGGTTCTGATATTACTTCTGCATTATATTTTGGTGGACGATGTCAGTTATTGCTGCTCTTGATTGTGGCAGAAACAAATTCCTGTATTTATTATTAGTACTTCTCTTTTAACTTCATCGAAAGACAAATGAAGCAAAGGTGCAGACATAAATTTTAGGACAGTGATTATCAAAATTGGTACTTTAAAATTGTTGCTTACAATCTTTAGAAGTTCAATTTTAAATTTGTGCTCATATTAATTTCTGATGAATTAAATGATTTTATGATATGAACATCAGTACTAATTAATTGCATAAACTATTGCTAAAAATAGGAAATTGGTTATTTAATATTCCTCTAAACATATTTTAGCATATAATGCTTAAATATATACTGAATACTGAC

Network for GWHGAAEX010595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00160.20	Pro_isomerase	16	168	1.20E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization
GO:0006457	Biological Process	protein folding
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.730
SRP064423	SRR2545915	Juvenile tuber	10.990
SRP108465	SRR5643513	five period of Gastrodia elata	12.050
	SRR5643514	five period of Gastrodia elata	11.590
	SRR5643515	five period of Gastrodia elata	12.640
	SRR5643524	five period of Gastrodia elata	12.320
	SRR5643525	five period of Gastrodia elata	18.320
	SRR5643528	five period of Gastrodia elata	16.480
	SRR5643658	five period of Gastrodia elata	20.060
	SRR5643659	five period of Gastrodia elata	11.770
	SRR5643660	five period of Gastrodia elata	11.870
	SRR5643661	five period of Gastrodia elata	10.620
	SRR5643662	five period of Gastrodia elata	11.330
	SRR5643663	five period of Gastrodia elata	11.090
	SRR5643664	five period of Gastrodia elata	11.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.280
SRP279888	Gastro	Gastrodia elata tuber	10.05
	Juven	Juvenile tuber	18.00
	Mother_Gastro	Mother tuber of Gastrodia elata	15.66
	Mother_Juven	Mother tuber of Juvenile	14.60