Gene detail

Detail information of GWHGAAEX010597/evm.TU.scaffold_30.103

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332982563\|ref\|YP_004464004.1\|	7.00E-68	raffinose synthase [Mahella australiensis 50-1 BON]
nr	gi\|743873075\|ref\|XP_010906722.1\|	0	PREDICTED: probable galactinol--sucrose galactosyltransferase 6 [Elaeis guineensis]
Swissprot	tr\|Q8RX87\|RFS6_ARATH	0	Probable galactinol--sucrose galactosyltransferase 6
trEMBL	tr\|M0TCV6\|M0TCV6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P35130_001}
TAIR	AT5G20250	0	Raffinose synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	4688012	4692750	-

Transcript Sequence
>GWHTAAEX010597 CCGTGCGTCTGGAAGCGACGGCGCGATGGCGGAAGCGATCTCAGCGAACTCAGCGTCAAGATCTCCAGGAGGTTGCGCGATGAACCCTACCTCTCCCAATAGATTGTTTGTAATGCTATCTGAATGTCGGTTGAAATCGACCGACATTCAAATAACATCACACGGTGGCATTTAGGTAATTTTTTAGATTGTCATTAAATAGATAACACTAAACCAAAAAGCTAATATCTCCCGGACATCTTTAAATAACATGACATAGCCGGAGATGTCAGCAAACCAAGCAGCCCCTAAATTATCAAAATTGATGGCATTGTTATAACACATCCAATTCCTCAATCTTTTCTCTATTACCAACAATGGGGATTCAAAAATATGTAGCTGCAAGAAAATACAATATTGATTAACTTAAATATGTAATTAAGTTTTTAAAATATTATTATAATGAATATTTGTTCAAGAAATAATGCCAAGTCTTTAATACATCAATATATTTAACAACATCATCTCTCAATTCGCGGAGAATAAATATCAGACTTAGCAATGGCTAATCAAAGAGAGAATACATTAAACTCATCTATCTTTGGAATTTAAGAAAAAATAAAATAAATGCTAAAAAATTTAAAAGCATGCACATGTCTCTAATTGCCTTAAAATTTTTGTTTCTAAGCTTTTATCTATATCTGAGTTGAATTGTTGGGGCATGCATCTACAGGCTGTTGGTGTAGGTTTGACTAAGCCTGATAAGCATACAAAGCTTGATAGGATGTTTAGTTTATATGAAAGATCAACAAAATTAGAGCCATTTGGTTTACAAACTTTTATCAATTAACGGTGCACAACTATCCACATTCGTGTTCGTTCTATTAATTTGCAAACCTAGATATTTCAAGCCCCAATATATAGCTAGTTCTTCCTTATTAAGAACAGCATCGGCAGATTTTGACAGTGCAATTTAATCCAAAGGCTGAGCTAAATGTATTTTGACATTTTCTTAGTTCTTCCAAACTTCTGAGCAAAACAAAGCGAGAGCGATGTAAATCACCTTTTTGAATAGGCTTCTTATAGCTTCCTCCAATAAATCAGAAAGGGCATTATAAAAAGAGTAAGAGATAAAGAAGAAGAACCTTTGCCTCCTCCGAGCTATTCACATTAACAGAAAGAACATTCTTGAGAAAAGTTTACAATTGATACAGTCAAATACTTTCCTCGAATCAATTTTAGCGCAAAAAACTTGTTGCTAGGTTGAGGAAATAGTTTGAAGATTTCATGAATAATCAACCATCTGACAAAAGAATTTAACCATCTGGTGTAACGAATAACATCCTATATATCTTTTCTTGGACGACATGGATGAAATTTAGCTTTAGCATTCGACGGCATTTTCGTGATGGATGCAGGGGATCGAGATTCTTGGCGTGCTTCAGGTTCAAGCTATGGTGGATGGCGCAGAAGATGGGGAGCAGGGGATCAGAAATACCCTGCGAAACCCAATTCCTTGTAGTGGAGACGAAGCCGGATGGGGAGGACAACACCGAAAACCTGTACTCCGTCTTCCTCCCCGTCCTCGAGGGCCCCTTCCGGTCATCCCTTCAGGGGAACCCTAACGATTGCCTGGAGATGTGCGTGGAGAGCGGCGACTCGGATATCCGCTCCTCCACCTTTTCCCGCGCCGTCTTCGTGGGCACCGCGGTTTCCGATCCCTTCGCAGCCATCGCCCGCGCCGTCCTCGCCGTCAGATCTCATCTCCGAACCTTCCGCCTCCGTGCGGAGAAACGTCTCCCTGCGATCCTCGATCTCTTCGGATGGTGCACTTGGGACGCGTTTTACCGTGCTGTCTCTCAGTCCGGCGTTGAAGCCGGCTTACACAGCCTCGTGGACGGCGGCGCTCCGCCAAAGTTCCTCATCATCGACGATGGATGGCAGTCCGTCGTGGATGATGGAGAAGGCTCATTGCCCCGCCTCACGGGTATCAAAGAGAATGCCAAGTTCCAGAGCTTGGAGTCCGTGGTTTCCGCCGCCAAGAACGAGTACGGAGTGAAATGCGTTTATGTGTGGCACGCTCTGATGGGATACTGGGGCGGAGTGGTGCTGGAGGCGGGATTTGATTCGGCCATAGCGTACCCCAGGATCTCGCCGGGAGTTTTGGAGAATGATCCGTCGTTCAAAACGGATGCTCTCACCCTGCAAGGCATTGGGCTGATGAACCCCAGGAGCGCCCCCAAATTCTTCGGTCAGCTCCATGCTTACCTTGCTGCAGCCGGCGTTGATGGAGTCAAGGTGGATGCGCAGTCCATTTTGGAGACGCTCGGCGCTGGGAATGGCGGCCGGGTGAATCTCACCAGATCTTACCACCAAGCGCTCGATTCCTCCATCGCCCAGAATTTTCCTGATAATGGATGCATTGCATGCATGAGCCACCACACTGATGCCCTATACTGCGAGAAGCAGACGGCGGTGGTGAGAGCGTCGGATGATTTCTTTCCGAGAGATCCGATGTCGCATACAATTCACATTGCGTCCGTAGCGTATAATAGCGTATTTCTGGGGGAGTTTATGGTGCCGGACTGGGACATGTTTCACTCCCTCCACCCAGCCGGGGACTTCCATGCATCGGCCCGTGCTATCAGCGGCGGCCCGGTCTATGTCAGCGATGCCCCTGGGAAGCACAACTTTGAGCTTCTGAGGAAATTGGTGCTCCCAGATGGATCCGTCCTCCGCGCCCGGCTTCCCGGCCGCCCCACTGCAGACTGCCTCTTCTCTGACCCAACCCGCGATGGCATAAGCCTGCTGAAGATCTGGAATATGAACACATTCACCGGCGTTCTCGGCGTCTACAACTGTCAAGGCGCTGCCTGGAGCTCATCCGAGAAGAAGAACACTTTCCACCCCACGAACTCAGCGGCATTAACCTCCTCTTTTAGATCAAATGATATCCACCTCATTTCAGAGGCCGCGACGGAACAAAGCTGGAATGGCAATTGCTCTATCTACAGCCATGGAAAGGGAGCGCTTTGCCTGCTTCTGAAGGGGGAAGCTCTACCCATTTCACTGAACGTTCTCGAGCATGAAGTTTTTACGGTCTCGCCCATCAAGGTTCTGGCGCCGGGATTATTGTTTGCTCCTCTGGGTCTGTTGGATATGTTCAATGCTGGTGGAGCGATAGAGGGGCTGAAATATGAGGAAAATGTAGGGAGGGTTTGCATGGAAGTGAAGGGTTGTGGAAGAATGGGAGCCTACGCTTCAGTTGAGCCAAAGAGATGCTTGCTGGGTGCTGAGCCTGCCAACTTCATTTACGATGCCTACGCTGGTCTCTTAACATTGCTGTTAGAGGATATGCCTGAAGGTGATAAGAATGTTCACACTGTGGTGGTTGAGTTTTAGTCAGGCTCCCGGCTCTTTCAATGCATCATGAATTGCATCGATCGTGTGTTTCTGATCTCTTGACATTATTATTGTTGGAGCAAACACAATTTAAAGGATTTTGAAATAAGTTTATAACATCTATTTAACATACCGTAACTTTTTGAAATCATCTCCTTATGATAGATACTCTTGCTTAGCGTGGTGAGATCAGAAATAATGAATTTATTTGACCTTGTTAGCTCAGGTGGCAATAGCTTTGGATTTTTAATTATTAATGTTTTTTCTTTGTTTAGATGGGTGAAGTTCTTAGAGTTTAAGAATAAAAGCTATGGGCTTACAAATTACATTCAAACA

Network for GWHGAAEX010597

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05691.11	Raffinose_syn	16	657	3.20E-266

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH36

KEGG pathway

KO	Enzyme	pathway	mapID
K06617	E2.4.1.82	Metabolic pathways	map01100
K06617	E2.4.1.82	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.330
SRP064423	SRR2545915	Juvenile tuber	8.220
SRP108465	SRR5643513	five period of Gastrodia elata	15.770
	SRR5643514	five period of Gastrodia elata	17.030
	SRR5643515	five period of Gastrodia elata	16.180
	SRR5643524	five period of Gastrodia elata	15.810
	SRR5643525	five period of Gastrodia elata	18.280
	SRR5643528	five period of Gastrodia elata	18.390
	SRR5643658	five period of Gastrodia elata	19.000
	SRR5643659	five period of Gastrodia elata	16.810
	SRR5643660	five period of Gastrodia elata	15.470
	SRR5643661	five period of Gastrodia elata	19.420
	SRR5643662	five period of Gastrodia elata	17.360
	SRR5643663	five period of Gastrodia elata	18.680
	SRR5643664	five period of Gastrodia elata	16.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.390
SRP279888	Gastro	Gastrodia elata tuber	20.27
	Juven	Juvenile tuber	14.41
	Mother_Gastro	Mother tuber of Gastrodia elata	11.43
	Mother_Juven	Mother tuber of Juvenile	9.53