Gene detail

Detail information of GWHGAAEX010601/evm.TU.scaffold_30.107

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521464700\|ref\|YP_008151844.1\|	1.00E-90	hypothetical protein SCE1572_27245 [Sorangium cellulosum So0157-2]
KOG	KOG2090	0	Metalloendopeptidase family - mitochondrial intermediate peptidase
nr	gi\|743777242\|ref\|XP_010919044.1\|	0	PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Elaeis guineensis]
Swissprot	tr\|F4KDA5\|MIPEP_ARATH	0	Probable mitochondrial intermediate peptidase, mitochondrial (Precursor)
trEMBL	tr\|M0SQZ2\|M0SQZ2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P21790_001}
TAIR	AT5G51540	0	Zincin-like metalloproteases family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000033	4784567	4788325	+

Transcript Sequence
>GWHTAAEX010601 AAGCCTTCCAATCATCCCTTAAATTTAAATCGTGAAGCTCGCCACCGATTAGGGTTCGCTACCCCTCCTCAGGCCTGTGCATCCTTCTTCTTCAGTGTCGGTTGGCTTGACCACGAGAAACAGGTCCTCAAGAGCCTCACGCAGAGGTCCTTAGCAACGGTATCGCACATGCTTCGCGCCATAAGAATACACCGTGTTGCAGAGTCTGCTCTTCGTTCTCGTTTCGGATCTCTCTTCTCCGGCAACTCTTTCTCCGTTTCAGTCACAGCAGATAGCGAAGTGACTGGTCTCTATGGCTTCCAGATCCTTAAAACTGCCAAGGGATTTCGAAGGTTCGTCAACGAGGCCATCGAAAGTGTCGAAGAGCTTGTCTTCCGTATTTCTCAGATGCCGCCCTCAGAAGAGGTTATAAAAGCCATGGACGAGATCTCTAACACCGTATGCTCTGTAATTGATTCCGCGGAGCTATGCAGGAACACGCATCCGGATAGGGAGTTTGTTGTTGAAGCAAACATGGCTTGTATGAAGATTTCAGAGTATCTGCACTGCCTAAACACGAACCGTACTTTATACAATGCTGTTTTAGTGGCCGAGCAGGAAGGATCAATACAATCAGAAGAAGCACGAAAGGCAGCCCGTAGCTTAAGGATTGACTTTGAAAAGGGCGGCATTCATCTTCCTACCGAGCAATTGGAACGTGTAAACCAATTAAACATACATATTGCTCTGCTAGGCAGACGGTTCAATGAAAATATCTCAAGTGATCCAGGTCATGTTGATGTCTTTCCAGCTTCATGTATTCCTAAGAACATGCAGCATCATTTCAAACCCATCTATCGGGAACCTCTTTCATTAGATAACGAGCCATTGGGATTAAGATATAAGAAAACTGAGAAAGGATTTCGATTAGAAACTGATCCTTCTAGTTTGTCCTCTATTCTTAAATGGGTTTCAAATGCTGAGGTAAGGAAGCAAGCTTATAGAGCAGGAAACTCTGCGCCTAGTGCCAATCTTGATGTACTTAATAAGCTCATAGCTGTTCGCCATGAACTGGCTCAAACAATGGGGTGTAGTTCTTATGCTGAATTTGCAATTCGTCCAAATATGGCTGCATCACCAAGCGTTGTCATTGAATTTTTGCTCTCTCTGAGCCATATGGTCAGGCAGAGGGCTGAAGGCGAGTTTAAGTTGTTACAGGATTACAAGAGGGCAGCATGTAGCGATGCTCATGCTGCTCTTGAGCCTTGGGACGAAGCTTACTTTGCAGGAAAAATGAAGTCTTCTGCATGCGATTTGGATTCTTCTGTTATCGCATCATACTTTCCCACTTCTCAGTGCCTCCAGGGCCTGAAATTGTTAGTTAACTCATTATTTGGCATGGAGTTCAGCAGCATTCCTTTGGCTCTTGGCGAGTCATGGCATCCGGATGTCATGAAATTCTTACTTCATCATCCTCAAGAGGGTGATTTAGGATTCATGTATTTAGATCTTTACACCAGGGATGGTAAATATCCTGGTTGCGCTCATTTTGCTGTCAGAGGTGGGCGCAGACTCTCTGACACGCAGTATCAGCTGCCTATTGTTGCTTTGGTGTGCAATTTCCCTACTTCACGAGCATCATCAATTTCAAAGCTCAATCATTGGGATGTTGAAACCCTCTTCCATGAGTTTGGACATGCTCTTCATTCACTTCTATCAAGAACGGACTTTCAGCACTTTTCAGGCACAAGAGTGGTTCTTGACTTAGCTGAAACCCCTTCCAACCTTTTTGAGTATTATGCTTGGGATTATCGAGTGTTAAGAATGTTTGCTAAACACTATTCGACTGGTGAAGCAATTCCTAAAGAATTAGTTGAGAGTATGAATCGTGCTAGGAACATGTTTTCTGCCATGGAATTTCAGCGCCAGATTTTCTACTCTTTGATTGACTTGACGCTCTCCGGAGAGCAGCCTGACAACCCAGTGGACACGATTTCTGTTGTTGCTGATCTTAAGAGGCAGTGCACTGTTTGGAAGCATGTTGAGGGAACACATTGGCATTCTAGATTTACTCATCTGATTAACTACGGAGCTGGTTACTATAGTTATATTTATGCAAAATGCTTTGCAGCTACAATATGGGAGAAAGTTTGCTGCGAGGATCCTTTATCTCTTAGCACCGGGACAGCCCTTAGAATGAAGTTCTTGCAACATGGTGGAGCGAAAGATCCATCAATCTTATTGAGGGATTTTGCAGGCCACAACATCCTTAGAAACTATAATGGTGGGATTGTCCCAGATACTACTAGCCTTTGCAAAGAAATGGATCTATGAGCTGTTTTATGATTGGTTCAAACACAAGTGTTAGCTTTGATATTTTTTAATTCTAAATGCTGTGGCTTTGTGTTTTAATGATTGTGTAGATTAGCAGCAAGTGATAAGACACTTGTAACTGATGCCATTCTCAATAAAGGAGACTCCCTTTGAGTTTACTCACAAACTACCCTGCTAATCTGTGCAAGAGGAATTATACTCCCATAATAGACATAGAGGTGCAACCTAAGCTGGGTTGATTTCTCCTGCACCTATAGCTGGTGGTCTGGTGCTGAATACATTACGTATTTTATAAGGTGCTGTTTTCAATAAAAGAAAAAAGAAGGAAACCTTCTCTCCCTTTGTCCTGGCTCACAGACCACAATTAAAAGTGTTATTGTAGATTGTGAAATTCCAAGGAGGAATCACAGTTCCACACATACTCTAAGAAATGACTTAAGCTGGACATATGATGATCTCGTTTCACTATTAGTTGCTATGTGTTCTGGTTTTGGTAACCTACAAGTAATGGAAAAGCAACTAGTTATACCGACCTTGTTCTCAGAAAAGGGAAGTCTCACTCTTTATCTTGTCTTACAGATCACAAGTAAACTGTTCGGGTTCGTACAAATATCTACAGAGGAATCATACTCACACTCCTGGAGACATGAAGGTAGAATATAATAAGCTGAAATGCTGATCTCTCCTTTATTATTAGTTGCTTGGTAAAAGTTTTTCTTGCAGGCAATTGGTATCTTAAAAAGTCGGCAACCTTGTGCCTGTCCTTGGCAAGTTAAAGGAGTGAAACAATGGATTGGAAAAGTGGCAAAGTAGAAAGATTTAATGTAAATTGCAATAAAGGGAAGCATATCCTGCAATCATCCTTTGATTGTAAGTTTAGTAATACTGAAGATATTATTATCTTTATAGCATTTAAAATTTTCATATATTCGCATCAAAAAGTTCAAAATTCATTTTTACAGAACTATTGTCCAACCTCACCATTGTGTGCAGTACTTGCGTCTGGTAATGATTTTGTAGTCGATCTAAATGTGATTTTATAGCTGCGTTATGATGTTTAAAGATTATGAATGGTATAAGGTCCAAACATAAAATATGGGTCTTAATTATGTAATATATTTATATTAGAGTGGCATGTATAGACATTAACCATTAACAAGTGGGAGGTATCCCTCTTGTAAATGGCACAGGGTTAGTGATAAGTTGCTTGAATGTGTGACCGAAATGAATATATGCTTTCCATTAAAAATCATTTAAACAATATTAGGGCTAATAAATACTGGAGATTGCTATACATACTTGTTTGATTACCAGCTTGTATGTAATCTGCTATATAAATGTGG

Network for GWHGAAEX010601

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01432.19	Peptidase_M3	258	692	2.90E-115

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004222	Molecular Function	metalloendopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.210
SRP064423	SRR2545915	Juvenile tuber	9.810
SRP108465	SRR5643513	five period of Gastrodia elata	6.610
	SRR5643514	five period of Gastrodia elata	4.010
	SRR5643515	five period of Gastrodia elata	5.210
	SRR5643524	five period of Gastrodia elata	4.940
	SRR5643525	five period of Gastrodia elata	5.160
	SRR5643528	five period of Gastrodia elata	4.210
	SRR5643658	five period of Gastrodia elata	5.500
	SRR5643659	five period of Gastrodia elata	10.700
	SRR5643660	five period of Gastrodia elata	12.060
	SRR5643661	five period of Gastrodia elata	11.230
	SRR5643662	five period of Gastrodia elata	9.980
	SRR5643663	five period of Gastrodia elata	10.100
	SRR5643664	five period of Gastrodia elata	10.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.610
SRP279888	Gastro	Gastrodia elata tuber	9.55
	Juven	Juvenile tuber	11.62
	Mother_Gastro	Mother tuber of Gastrodia elata	2.82
	Mother_Juven	Mother tuber of Juvenile	6.31