Detail information of GWHGAAEX010606/evm.TU.scaffold_30.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-121 | FOG: PPR repeat |
| nr | gi|359491266|ref|XP_002280289.2| | 2.20E-173 | PREDICTED: pentatricopeptide repeat-containing protein At3g62890 [Vitis vinifera] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 3.00E-122 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|W9SIQ7|W9SIQ7_9ROSA | 3.00E-154 | Uncharacterized protein {ECO:0000313|EMBL:EXC31176.1} |
| TAIR | AT5G66520 | 1.00E-121 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000033 | 5493364 | 5495543 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010606
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 171 | 198 | 5.20E-06 |
| PF01535.19 | PPR | 204 | 232 | 2.30E-06 |
| PF01535.19 | PPR | 278 | 298 | 0.049 |
| PF01535.19 | PPR | 307 | 332 | 6.40E-05 |
| PF01535.19 | PPR | 345 | 367 | 0.021 |
| PF01535.19 | PPR | 377 | 401 | 0.41 |
| PF01535.19 | PPR | 450 | 471 | 1 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.680 |
| SRR2545915 | Juvenile tuber | 1.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.900 |
| SRR5643514 | five period of Gastrodia elata | 1.310 | |
| SRR5643515 | five period of Gastrodia elata | 1.300 | |
| SRR5643524 | five period of Gastrodia elata | 1.070 | |
| SRR5643525 | five period of Gastrodia elata | 0.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.180 | |
| SRR5643658 | five period of Gastrodia elata | 0.300 | |
| SRR5643659 | five period of Gastrodia elata | 1.900 | |
| SRR5643660 | five period of Gastrodia elata | 2.290 | |
| SRR5643661 | five period of Gastrodia elata | 2.990 | |
| SRR5643662 | five period of Gastrodia elata | 2.950 | |
| SRR5643663 | five period of Gastrodia elata | 2.220 | |
| SRR5643664 | five period of Gastrodia elata | 3.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.62 |
| Juven | Juvenile tuber | 3.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.43 | |
| Mother_Juven | Mother tuber of Juvenile | 0.69 |