Detail information of GWHGAAEX010610/evm.TU.scaffold_30.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1872 | 0 | Ubiquitin-specific protease |
| nr | gi|743755551|ref|XP_010912089.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q949Y0|UBP6_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 6 |
| trEMBL | tr|U5CZM9|U5CZM9_AMBTC | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT3G21280 | 0 | ubiquitin-specific protease 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000033 | 6239563 | 6288321 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010610
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00240.22 | ubiquitin | 6 | 73 | 1.90E-07 |
| PF00443.28 | UCH | 105 | 474 | 4.10E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.280 |
| SRR2545915 | Juvenile tuber | 70.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 51.180 |
| SRR5643514 | five period of Gastrodia elata | 57.360 | |
| SRR5643515 | five period of Gastrodia elata | 49.550 | |
| SRR5643524 | five period of Gastrodia elata | 59.260 | |
| SRR5643525 | five period of Gastrodia elata | 38.620 | |
| SRR5643528 | five period of Gastrodia elata | 35.040 | |
| SRR5643658 | five period of Gastrodia elata | 37.750 | |
| SRR5643659 | five period of Gastrodia elata | 59.610 | |
| SRR5643660 | five period of Gastrodia elata | 53.700 | |
| SRR5643661 | five period of Gastrodia elata | 48.120 | |
| SRR5643662 | five period of Gastrodia elata | 38.570 | |
| SRR5643663 | five period of Gastrodia elata | 40.650 | |
| SRR5643664 | five period of Gastrodia elata | 36.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 51.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 56.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 49.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 55.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 64.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 59.70 |
| Juven | Juvenile tuber | 81.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 70.37 | |
| Mother_Juven | Mother tuber of Juvenile | 91.10 |