Detail information of GWHGAAEX010614/evm.TU.scaffold_300.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG07061.00E-125Predicted GTPase-activating protein
nrgi|743826990|ref|XP_010933465.1|8.23E-157PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Elaeis guineensis]
Swissprottr|Q8H100|AGD8_ARATH4.00E-127Probable ADP-ribosylation factor GTPase-activating protein AGD8
trEMBLtr|D7TTW7|D7TTW7_VITVI3.00E-151Putative uncharacterized protein {ECO:0000313|EMBL:CBI33882.3}
TAIRAT5G467501.00E-125ARF-GAP domain 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002962999674334-
Transcript Sequence

Network for GWHGAAEX010614

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01412.17ArfGap121109.50E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12493ARFGAP2_3 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005096Molecular FunctionGTPase activator activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms197.520
SRR2545915Juvenile tuber206.610
SRP108465SRR5643513five period of Gastrodia elata96.100
SRR5643514five period of Gastrodia elata84.470
SRR5643515five period of Gastrodia elata89.540
SRR5643524five period of Gastrodia elata90.700
SRR5643525five period of Gastrodia elata236.120
SRR5643528five period of Gastrodia elata188.670
SRR5643658five period of Gastrodia elata263.000
SRR5643659five period of Gastrodia elata153.440
SRR5643660five period of Gastrodia elata177.980
SRR5643661five period of Gastrodia elata148.570
SRR5643662five period of Gastrodia elata179.340
SRR5643663five period of Gastrodia elata199.000
SRR5643664five period of Gastrodia elata232.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_198.150
SRR6049655Rhizomagastrodiae_C368-T10_good_168.390
SRR6049656Rhizomagastrodiae_C368-T07_good_191.070
SRR6049657Rhizomagastrodiae_C368-T07_good_1117.920
SRR6049658Rhizomagastrodiae_C368-T04_good_1130.180
SRR6049659Rhizomagastrodiae_C368-T04_good_1141.500
SRR6049660Rhizomagastrodiae_C368-T01_good_1105.420
SRR6049661Rhizomagastrodiae_C368-T04_good_1118.980
SRR6049662Rhizomagastrodiae_C368-T01_good_162.470
SRR6049663Rhizomagastrodiae_C368-T01_good_182.910
SRR6049664Rhizomagastrodiae_C368-T10_good_166.880
SRR6049665Rhizomagastrodiae_C368-T10_good_166.880
SRP279888GastroGastrodia elata tuber 310.63
JuvenJuvenile tuber252.63
Mother_GastroMother tuber of Gastrodia elata 185.10
Mother_JuvenMother tuber of Juvenile 238.83