Detail information of GWHGAAEX010616/evm.TU.scaffold_300.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743778988|ref|XP_010919958.1|0PREDICTED: transcription factor MYC4-like [Elaeis guineensis]
Swissprottr|Q39204|MYC2_ARATH2.00E-180Transcription factor MYC2
trEMBLtr|F6HT90|F6HT90_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57900.1}
TAIRAT1G326408.00E-180Basic helix-loop-helix (bHLH) DNA-binding family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000296139854141752+
Transcript Sequence

Network for GWHGAAEX010616

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14215.5bHLH-MYC_N572411.60E-53
PF00010.25HLH4484931.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
K13422MYC2 MAPK signaling pathway - plant map04016
Plant hormone signal transductionmap04075

Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms44.470
SRR2545915Juvenile tuber43.670
SRP108465SRR5643513five period of Gastrodia elata91.080
SRR5643514five period of Gastrodia elata93.340
SRR5643515five period of Gastrodia elata113.040
SRR5643524five period of Gastrodia elata89.780
SRR5643525five period of Gastrodia elata93.550
SRR5643528five period of Gastrodia elata121.010
SRR5643658five period of Gastrodia elata131.840
SRR5643659five period of Gastrodia elata116.210
SRR5643660five period of Gastrodia elata144.480
SRR5643661five period of Gastrodia elata125.100
SRR5643662five period of Gastrodia elata143.840
SRR5643663five period of Gastrodia elata115.070
SRR5643664five period of Gastrodia elata171.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1147.860
SRR6049655Rhizomagastrodiae_C368-T10_good_158.290
SRR6049656Rhizomagastrodiae_C368-T07_good_1100.580
SRR6049657Rhizomagastrodiae_C368-T07_good_1181.770
SRR6049658Rhizomagastrodiae_C368-T04_good_1146.010
SRR6049659Rhizomagastrodiae_C368-T04_good_1180.310
SRR6049660Rhizomagastrodiae_C368-T01_good_1124.570
SRR6049661Rhizomagastrodiae_C368-T04_good_1128.320
SRR6049662Rhizomagastrodiae_C368-T01_good_177.200
SRR6049663Rhizomagastrodiae_C368-T01_good_175.200
SRR6049664Rhizomagastrodiae_C368-T10_good_168.580
SRR6049665Rhizomagastrodiae_C368-T10_good_168.580
SRP279888GastroGastrodia elata tuber 132.43
JuvenJuvenile tuber226.01
Mother_GastroMother tuber of Gastrodia elata 116.58
Mother_JuvenMother tuber of Juvenile 131.05