Detail information of GWHGAAEX010620/evm.TU.scaffold_300.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194334049|ref|YP_002015909.1| | 5.00E-09 | RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271] |
| KOG | KOG0117 | 3.00E-26 | Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) |
| nr | gi|743775851|ref|XP_010918318.1| | 1.48E-155 | PREDICTED: nucleolin-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SVM8|RBG2_ARATH | 2.00E-10 | Glycine-rich RNA-binding protein 2, mitochondrial (Precursor) |
| trEMBL | tr|M0S7C0|M0S7C0_MUSAM | 7.00E-146 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P12290_001} |
| TAIR | CE25017 | 3.00E-26 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000296 | 217639 | 241388 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010620
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 184 | 254 | 1.50E-14 |
| PF00076.21 | RRM_1 | 265 | 328 | 1.00E-07 |
| PF00076.21 | RRM_1 | 363 | 419 | 5.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 145.490 |
| SRR2545915 | Juvenile tuber | 165.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 75.780 |
| SRR5643514 | five period of Gastrodia elata | 63.810 | |
| SRR5643515 | five period of Gastrodia elata | 61.490 | |
| SRR5643524 | five period of Gastrodia elata | 61.170 | |
| SRR5643525 | five period of Gastrodia elata | 28.060 | |
| SRR5643528 | five period of Gastrodia elata | 29.070 | |
| SRR5643658 | five period of Gastrodia elata | 24.170 | |
| SRR5643659 | five period of Gastrodia elata | 92.680 | |
| SRR5643660 | five period of Gastrodia elata | 101.400 | |
| SRR5643661 | five period of Gastrodia elata | 92.890 | |
| SRR5643662 | five period of Gastrodia elata | 84.030 | |
| SRR5643663 | five period of Gastrodia elata | 84.290 | |
| SRR5643664 | five period of Gastrodia elata | 93.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 105.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 124.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 83.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 128.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 91.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 117.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 110.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 95.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 79.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 86.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 77.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 77.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 94.32 |
| Juven | Juvenile tuber | 155.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.15 | |
| Mother_Juven | Mother tuber of Juvenile | 77.29 |