Detail information of GWHGAAEX010621/evm.TU.scaffold_301.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|183221265|ref|YP_001839261.1|3.00E-09RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOGKOG01187.00E-42FOG: RRM domain
nrgi|743865470|ref|XP_010904837.1|2.71E-66PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Elaeis guineensis]
Swissprottr|Q1PDV2|SRC28_ARATH2.00E-45Serine/arginine-rich SC35-like splicing factor SCL28
trEMBLtr|B9RSX1|B9RSX1_RICCO8.00E-66Serine/arginine rich splicing factor, putative {ECO:0000313|EMBL:EEF45454.1}
TAIRAT5G188107.00E-42SC35-like splicing factor 28

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000293146470174126-
Transcript Sequence

Network for GWHGAAEX010621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1651348.00E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12900FUSIP1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms71.710
SRR2545915Juvenile tuber59.940
SRP108465SRR5643513five period of Gastrodia elata50.720
SRR5643514five period of Gastrodia elata40.350
SRR5643515five period of Gastrodia elata44.440
SRR5643524five period of Gastrodia elata40.200
SRR5643525five period of Gastrodia elata26.930
SRR5643528five period of Gastrodia elata26.330
SRR5643658five period of Gastrodia elata31.100
SRR5643659five period of Gastrodia elata57.830
SRR5643660five period of Gastrodia elata55.660
SRR5643661five period of Gastrodia elata56.220
SRR5643662five period of Gastrodia elata56.650
SRR5643663five period of Gastrodia elata53.240
SRR5643664five period of Gastrodia elata66.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.390
SRR6049655Rhizomagastrodiae_C368-T10_good_163.420
SRR6049656Rhizomagastrodiae_C368-T07_good_144.090
SRR6049657Rhizomagastrodiae_C368-T07_good_150.710
SRR6049658Rhizomagastrodiae_C368-T04_good_145.730
SRR6049659Rhizomagastrodiae_C368-T04_good_149.430
SRR6049660Rhizomagastrodiae_C368-T01_good_153.730
SRR6049661Rhizomagastrodiae_C368-T04_good_143.640
SRR6049662Rhizomagastrodiae_C368-T01_good_141.870
SRR6049663Rhizomagastrodiae_C368-T01_good_143.750
SRR6049664Rhizomagastrodiae_C368-T10_good_147.320
SRR6049665Rhizomagastrodiae_C368-T10_good_147.320
SRP279888GastroGastrodia elata tuber 57.16
JuvenJuvenile tuber50.87
Mother_GastroMother tuber of Gastrodia elata 32.51
Mother_JuvenMother tuber of Juvenile 41.78