Detail information of GWHGAAEX010623/evm.TU.scaffold_302.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427735203|ref|YP_007054747.1| | 5.00E-37 | WD40 repeat-containing protein [Rivularia sp. PCC 7116] |
| KOG | KOG0291 | 0 | WD40-repeat-containing subunit of the 18S rRNA processing complex |
| nr | gi|743796108|ref|XP_010924647.1| | 0 | PREDICTED: periodic tryptophan protein 2 homolog [Elaeis guineensis] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 7.00E-24 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|A5BLN0|A5BLN0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN74744.1} |
| TAIR | AT1G15440 | 0 | periodic tryptophan protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000294 | 17114 | 28886 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010623
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 132 | 167 | 0.0053 |
| PF00400.31 | WD40 | 374 | 404 | 1.50E-07 |
| PF00400.31 | WD40 | 411 | 447 | 0.0001 |
| PF00400.31 | WD40 | 496 | 533 | 2.20E-08 |
| PF00400.31 | WD40 | 546 | 575 | 0.086 |
| PF04003.11 | Utp12 | 778 | 882 | 4.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14558 | PWP2, UTP1 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.850 |
| SRR2545915 | Juvenile tuber | 25.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.040 |
| SRR5643514 | five period of Gastrodia elata | 14.780 | |
| SRR5643515 | five period of Gastrodia elata | 14.080 | |
| SRR5643524 | five period of Gastrodia elata | 14.500 | |
| SRR5643525 | five period of Gastrodia elata | 8.560 | |
| SRR5643528 | five period of Gastrodia elata | 8.250 | |
| SRR5643658 | five period of Gastrodia elata | 6.230 | |
| SRR5643659 | five period of Gastrodia elata | 19.250 | |
| SRR5643660 | five period of Gastrodia elata | 20.790 | |
| SRR5643661 | five period of Gastrodia elata | 18.500 | |
| SRR5643662 | five period of Gastrodia elata | 18.590 | |
| SRR5643663 | five period of Gastrodia elata | 19.910 | |
| SRR5643664 | five period of Gastrodia elata | 18.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.51 |
| Juven | Juvenile tuber | 26.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.19 | |
| Mother_Juven | Mother tuber of Juvenile | 16.53 |