Detail information of GWHGAAEX010624/evm.TU.scaffold_302.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG11907.00E-58Polypyrimidine tract-binding protein
nrgi|672124887|ref|XP_008785843.1|4.73E-70PREDICTED: polypyrimidine tract-binding protein homolog 3-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q6ICX4|PTBP3_ARATH9.00E-58Polypyrimidine tract-binding protein homolog 3
trEMBLtr|M0SGW2|M0SGW2_MUSAM7.00E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P22460_001}
TAIRAT1G431907.00E-58polypyrimidine tract-binding protein 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000294172022172417+
Transcript Sequence

Network for GWHGAAEX010624

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1581221.50E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms161.780
SRR2545915Juvenile tuber145.600
SRP108465SRR5643513five period of Gastrodia elata93.210
SRR5643514five period of Gastrodia elata90.160
SRR5643515five period of Gastrodia elata91.950
SRR5643524five period of Gastrodia elata60.630
SRR5643525five period of Gastrodia elata113.620
SRR5643528five period of Gastrodia elata102.470
SRR5643658five period of Gastrodia elata110.850
SRR5643659five period of Gastrodia elata83.670
SRR5643660five period of Gastrodia elata94.760
SRR5643661five period of Gastrodia elata85.880
SRR5643662five period of Gastrodia elata85.020
SRR5643663five period of Gastrodia elata95.810
SRR5643664five period of Gastrodia elata84.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1135.100
SRR6049655Rhizomagastrodiae_C368-T10_good_1113.950
SRR6049656Rhizomagastrodiae_C368-T07_good_1172.120
SRR6049657Rhizomagastrodiae_C368-T07_good_1171.910
SRR6049658Rhizomagastrodiae_C368-T04_good_1158.260
SRR6049659Rhizomagastrodiae_C368-T04_good_1177.600
SRR6049660Rhizomagastrodiae_C368-T01_good_1142.710
SRR6049661Rhizomagastrodiae_C368-T04_good_1155.560
SRR6049662Rhizomagastrodiae_C368-T01_good_1127.720
SRR6049663Rhizomagastrodiae_C368-T01_good_1138.700
SRR6049664Rhizomagastrodiae_C368-T10_good_1143.570
SRR6049665Rhizomagastrodiae_C368-T10_good_1143.570
SRP279888GastroGastrodia elata tuber 232.99
JuvenJuvenile tuber201.74
Mother_GastroMother tuber of Gastrodia elata 184.72
Mother_JuvenMother tuber of Juvenile 158.44