Detail information of GWHGAAEX010627/evm.TU.scaffold_303.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33311.00E-64Mitochondrial/chloroplast ribosomal protein L4/L29
nrgi|351721907|ref|NP_001238505.1|1.57E-69uncharacterized protein LOC100500208 [Glycine max]
trEMBLtr|C6T0Z6|C6T0Z6_SOYBN6.00E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G20510.1}
TAIRAT1G078301.00E-64ribosomal protein L29 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000295158036198913+
Transcript Sequence

Network for GWHGAAEX010627

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06984.12MRP-L47371234.50E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome
GO:0005761Cellular Componentmitochondrial ribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.550
SRR2545915Juvenile tuber77.780
SRP108465SRR5643513five period of Gastrodia elata57.300
SRR5643514five period of Gastrodia elata54.260
SRR5643515five period of Gastrodia elata56.750
SRR5643524five period of Gastrodia elata51.930
SRR5643525five period of Gastrodia elata84.810
SRR5643528five period of Gastrodia elata78.020
SRR5643658five period of Gastrodia elata70.620
SRR5643659five period of Gastrodia elata102.220
SRR5643660five period of Gastrodia elata95.680
SRR5643661five period of Gastrodia elata121.510
SRR5643662five period of Gastrodia elata122.780
SRR5643663five period of Gastrodia elata112.620
SRR5643664five period of Gastrodia elata128.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_161.180
SRR6049655Rhizomagastrodiae_C368-T10_good_166.030
SRR6049656Rhizomagastrodiae_C368-T07_good_161.790
SRR6049657Rhizomagastrodiae_C368-T07_good_169.820
SRR6049658Rhizomagastrodiae_C368-T04_good_177.370
SRR6049659Rhizomagastrodiae_C368-T04_good_184.340
SRR6049660Rhizomagastrodiae_C368-T01_good_161.440
SRR6049661Rhizomagastrodiae_C368-T04_good_178.780
SRR6049662Rhizomagastrodiae_C368-T01_good_157.750
SRR6049663Rhizomagastrodiae_C368-T01_good_171.360
SRR6049664Rhizomagastrodiae_C368-T10_good_165.060
SRR6049665Rhizomagastrodiae_C368-T10_good_165.060
SRP279888GastroGastrodia elata tuber 133.57
JuvenJuvenile tuber88.94
Mother_GastroMother tuber of Gastrodia elata 59.27
Mother_JuvenMother tuber of Juvenile 55.78